miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12771 5' -50 NC_003387.1 + 7088 0.66 0.943461
Target:  5'- gGCGGCcGAuCUUcGCCucGCCGUAcGCCGa -3'
miRNA:   3'- -CGCUGuCU-GAAuUGG--CGGUAUuCGGU- -5'
12771 5' -50 NC_003387.1 + 17571 0.66 0.941923
Target:  5'- gGCGACAacgccccgcuggucGACcugcagUGGCCGCCGcuUGAGCa- -3'
miRNA:   3'- -CGCUGU--------------CUGa-----AUUGGCGGU--AUUCGgu -5'
12771 5' -50 NC_003387.1 + 18310 0.66 0.940358
Target:  5'- cGCGGCGGuggcgcccggcaacgGCgUGGCCGUCGUGcccGCCGg -3'
miRNA:   3'- -CGCUGUC---------------UGaAUUGGCGGUAUu--CGGU- -5'
12771 5' -50 NC_003387.1 + 11792 0.66 0.93823
Target:  5'- gGCGACcaGCUc-GCCGuCCAUcAGGCCAc -3'
miRNA:   3'- -CGCUGucUGAauUGGC-GGUA-UUCGGU- -5'
12771 5' -50 NC_003387.1 + 19301 0.66 0.93823
Target:  5'- aGCaGCAGGCacAGCCGCaCAacGGCCu -3'
miRNA:   3'- -CGcUGUCUGaaUUGGCG-GUauUCGGu -5'
12771 5' -50 NC_003387.1 + 4891 0.66 0.93823
Target:  5'- uCGACAGGCUgauCUGCCGggugcgguAGCUg -3'
miRNA:   3'- cGCUGUCUGAauuGGCGGUau------UCGGu -5'
12771 5' -50 NC_003387.1 + 52517 0.66 0.938229
Target:  5'- cGCGACAagagcGACa-AGCCGCCGagcUGgcGGCCGg -3'
miRNA:   3'- -CGCUGU-----CUGaaUUGGCGGU---AU--UCGGU- -5'
12771 5' -50 NC_003387.1 + 40353 0.66 0.932698
Target:  5'- uGCaGCAGGCcgUGAUCGCgGccgGGGCCAa -3'
miRNA:   3'- -CGcUGUCUGa-AUUGGCGgUa--UUCGGU- -5'
12771 5' -50 NC_003387.1 + 41687 0.66 0.926865
Target:  5'- cGCGACAuagcGGCcuucauguUCGCCAUcGAGCCAa -3'
miRNA:   3'- -CGCUGU----CUGaauu----GGCGGUA-UUCGGU- -5'
12771 5' -50 NC_003387.1 + 37461 0.66 0.926865
Target:  5'- uGCuGGCGGcGCUgcGCCGCCAaaagguGCCGg -3'
miRNA:   3'- -CG-CUGUC-UGAauUGGCGGUauu---CGGU- -5'
12771 5' -50 NC_003387.1 + 33377 0.66 0.926865
Target:  5'- cGCgGGCGGAUgggacGCCGCCGcAGGCaCAu -3'
miRNA:   3'- -CG-CUGUCUGaau--UGGCGGUaUUCG-GU- -5'
12771 5' -50 NC_003387.1 + 5900 0.66 0.926865
Target:  5'- cGCGGCAGAagcaUUGcGCCGCUuacgcGCCGg -3'
miRNA:   3'- -CGCUGUCUg---AAU-UGGCGGuauu-CGGU- -5'
12771 5' -50 NC_003387.1 + 1944 0.66 0.926865
Target:  5'- cGCGACgcaggcgguugGGGCUggGACCGCCGcGAcCCGa -3'
miRNA:   3'- -CGCUG-----------UCUGAa-UUGGCGGUaUUcGGU- -5'
12771 5' -50 NC_003387.1 + 26481 0.66 0.926265
Target:  5'- gGCGGCGGugUUGcggcuaagaaugcGCUGCCcgAggagugcgaGGCCGa -3'
miRNA:   3'- -CGCUGUCugAAU-------------UGGCGGuaU---------UCGGU- -5'
12771 5' -50 NC_003387.1 + 1185 0.66 0.924447
Target:  5'- aGCGGCGGGCgcaggggcaagggUGGCCGUCGacgGGGCa- -3'
miRNA:   3'- -CGCUGUCUGa------------AUUGGCGGUa--UUCGgu -5'
12771 5' -50 NC_003387.1 + 48132 0.66 0.920729
Target:  5'- cGUGGCAGACccgcgcgcAGCgCGCCAccgAGGCCc -3'
miRNA:   3'- -CGCUGUCUGaa------UUG-GCGGUa--UUCGGu -5'
12771 5' -50 NC_003387.1 + 27215 0.66 0.920729
Target:  5'- gGCGAUcagcuuGGACUUGaACCGCUGcAGGUCGc -3'
miRNA:   3'- -CGCUG------UCUGAAU-UGGCGGUaUUCGGU- -5'
12771 5' -50 NC_003387.1 + 18231 0.66 0.920729
Target:  5'- aGCGGCGGGCgu-ACU--CGUAGGCCGc -3'
miRNA:   3'- -CGCUGUCUGaauUGGcgGUAUUCGGU- -5'
12771 5' -50 NC_003387.1 + 7841 0.66 0.920729
Target:  5'- gGCGcGCAGGCggAAUCGCCGac-GCCc -3'
miRNA:   3'- -CGC-UGUCUGaaUUGGCGGUauuCGGu -5'
12771 5' -50 NC_003387.1 + 7623 0.67 0.914292
Target:  5'- cGCGGCGucGACgaccUGGCCGCCGaacaccGGCCc -3'
miRNA:   3'- -CGCUGU--CUGa---AUUGGCGGUau----UCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.