Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12771 | 5' | -50 | NC_003387.1 | + | 7088 | 0.66 | 0.943461 |
Target: 5'- gGCGGCcGAuCUUcGCCucGCCGUAcGCCGa -3' miRNA: 3'- -CGCUGuCU-GAAuUGG--CGGUAUuCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 17571 | 0.66 | 0.941923 |
Target: 5'- gGCGACAacgccccgcuggucGACcugcagUGGCCGCCGcuUGAGCa- -3' miRNA: 3'- -CGCUGU--------------CUGa-----AUUGGCGGU--AUUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 18310 | 0.66 | 0.940358 |
Target: 5'- cGCGGCGGuggcgcccggcaacgGCgUGGCCGUCGUGcccGCCGg -3' miRNA: 3'- -CGCUGUC---------------UGaAUUGGCGGUAUu--CGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 11792 | 0.66 | 0.93823 |
Target: 5'- gGCGACcaGCUc-GCCGuCCAUcAGGCCAc -3' miRNA: 3'- -CGCUGucUGAauUGGC-GGUA-UUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 19301 | 0.66 | 0.93823 |
Target: 5'- aGCaGCAGGCacAGCCGCaCAacGGCCu -3' miRNA: 3'- -CGcUGUCUGaaUUGGCG-GUauUCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 4891 | 0.66 | 0.93823 |
Target: 5'- uCGACAGGCUgauCUGCCGggugcgguAGCUg -3' miRNA: 3'- cGCUGUCUGAauuGGCGGUau------UCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 52517 | 0.66 | 0.938229 |
Target: 5'- cGCGACAagagcGACa-AGCCGCCGagcUGgcGGCCGg -3' miRNA: 3'- -CGCUGU-----CUGaaUUGGCGGU---AU--UCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 40353 | 0.66 | 0.932698 |
Target: 5'- uGCaGCAGGCcgUGAUCGCgGccgGGGCCAa -3' miRNA: 3'- -CGcUGUCUGa-AUUGGCGgUa--UUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 41687 | 0.66 | 0.926865 |
Target: 5'- cGCGACAuagcGGCcuucauguUCGCCAUcGAGCCAa -3' miRNA: 3'- -CGCUGU----CUGaauu----GGCGGUA-UUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 37461 | 0.66 | 0.926865 |
Target: 5'- uGCuGGCGGcGCUgcGCCGCCAaaagguGCCGg -3' miRNA: 3'- -CG-CUGUC-UGAauUGGCGGUauu---CGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 33377 | 0.66 | 0.926865 |
Target: 5'- cGCgGGCGGAUgggacGCCGCCGcAGGCaCAu -3' miRNA: 3'- -CG-CUGUCUGaau--UGGCGGUaUUCG-GU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 5900 | 0.66 | 0.926865 |
Target: 5'- cGCGGCAGAagcaUUGcGCCGCUuacgcGCCGg -3' miRNA: 3'- -CGCUGUCUg---AAU-UGGCGGuauu-CGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 1944 | 0.66 | 0.926865 |
Target: 5'- cGCGACgcaggcgguugGGGCUggGACCGCCGcGAcCCGa -3' miRNA: 3'- -CGCUG-----------UCUGAa-UUGGCGGUaUUcGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 26481 | 0.66 | 0.926265 |
Target: 5'- gGCGGCGGugUUGcggcuaagaaugcGCUGCCcgAggagugcgaGGCCGa -3' miRNA: 3'- -CGCUGUCugAAU-------------UGGCGGuaU---------UCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 1185 | 0.66 | 0.924447 |
Target: 5'- aGCGGCGGGCgcaggggcaagggUGGCCGUCGacgGGGCa- -3' miRNA: 3'- -CGCUGUCUGa------------AUUGGCGGUa--UUCGgu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 48132 | 0.66 | 0.920729 |
Target: 5'- cGUGGCAGACccgcgcgcAGCgCGCCAccgAGGCCc -3' miRNA: 3'- -CGCUGUCUGaa------UUG-GCGGUa--UUCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 27215 | 0.66 | 0.920729 |
Target: 5'- gGCGAUcagcuuGGACUUGaACCGCUGcAGGUCGc -3' miRNA: 3'- -CGCUG------UCUGAAU-UGGCGGUaUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 18231 | 0.66 | 0.920729 |
Target: 5'- aGCGGCGGGCgu-ACU--CGUAGGCCGc -3' miRNA: 3'- -CGCUGUCUGaauUGGcgGUAUUCGGU- -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 7841 | 0.66 | 0.920729 |
Target: 5'- gGCGcGCAGGCggAAUCGCCGac-GCCc -3' miRNA: 3'- -CGC-UGUCUGaaUUGGCGGUauuCGGu -5' |
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12771 | 5' | -50 | NC_003387.1 | + | 7623 | 0.67 | 0.914292 |
Target: 5'- cGCGGCGucGACgaccUGGCCGCCGaacaccGGCCc -3' miRNA: 3'- -CGCUGU--CUGa---AUUGGCGGUau----UCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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