miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12772 3' -57.5 NC_003387.1 + 36752 0.74 0.164546
Target:  5'- -aGCGCCUGGGCGUCAc-CGUCaGCGAc -3'
miRNA:   3'- gaCGCGGACUCGCAGUuaGCGG-CGUU- -5'
12772 3' -57.5 NC_003387.1 + 36211 0.71 0.265874
Target:  5'- -gGCGCCUcGGCGUaaucgaGGUCGUCGCAu -3'
miRNA:   3'- gaCGCGGAcUCGCAg-----UUAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 35802 0.67 0.470882
Target:  5'- gCUGUGCCUcGGCG-CcGUCGgCGCGAu -3'
miRNA:   3'- -GACGCGGAcUCGCaGuUAGCgGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 32588 0.66 0.555085
Target:  5'- gCUGCucauCCUGA-CGUCGAuccugcucgggcUCGCCGCGGg -3'
miRNA:   3'- -GACGc---GGACUcGCAGUU------------AGCGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 30124 0.69 0.358248
Target:  5'- -aGgGCCUGAGCuUCGaccGUgGCCGCAc -3'
miRNA:   3'- gaCgCGGACUCGcAGU---UAgCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 29877 0.66 0.522857
Target:  5'- gUGCGCCuUGcGCGcCGAUCGCguuggcgauCGCGAg -3'
miRNA:   3'- gACGCGG-ACuCGCaGUUAGCG---------GCGUU- -5'
12772 3' -57.5 NC_003387.1 + 29617 0.66 0.555085
Target:  5'- -cGCGCC-GGGCGcCAGcggcUUGCCGUAc -3'
miRNA:   3'- gaCGCGGaCUCGCaGUU----AGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 29364 0.66 0.54427
Target:  5'- -gGCGaCCUGAcCGUCAGcggCGCCGguGa -3'
miRNA:   3'- gaCGC-GGACUcGCAGUUa--GCGGCguU- -5'
12772 3' -57.5 NC_003387.1 + 29005 0.68 0.431259
Target:  5'- cCUGCGCC-GAGuCGU---UCGCCGCc- -3'
miRNA:   3'- -GACGCGGaCUC-GCAguuAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 28945 0.66 0.512271
Target:  5'- --aCGCCUGAGUGUCGuguagcuaacCGCCGgCAAa -3'
miRNA:   3'- gacGCGGACUCGCAGUua--------GCGGC-GUU- -5'
12772 3' -57.5 NC_003387.1 + 27330 0.67 0.481075
Target:  5'- -cGCGCCUucuCGUCGAgcaGCCGCAGc -3'
miRNA:   3'- gaCGCGGAcucGCAGUUag-CGGCGUU- -5'
12772 3' -57.5 NC_003387.1 + 26118 0.75 0.151475
Target:  5'- cCUGCGCCaGGucggcGCGUCcGUCGCCGCu- -3'
miRNA:   3'- -GACGCGGaCU-----CGCAGuUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 25829 0.66 0.533525
Target:  5'- -gGCgGCCUGGGCGguggccugcUCGGUgGCgGCAAg -3'
miRNA:   3'- gaCG-CGGACUCGC---------AGUUAgCGgCGUU- -5'
12772 3' -57.5 NC_003387.1 + 24865 0.69 0.366888
Target:  5'- -cGCGCC--GGUGUCGAUCGUgGCGc -3'
miRNA:   3'- gaCGCGGacUCGCAGUUAGCGgCGUu -5'
12772 3' -57.5 NC_003387.1 + 24623 0.66 0.498645
Target:  5'- -cGCGCCUGGGCGacccgacgcaccUCGcccugcugcgcgagGUCGCCaGCGc -3'
miRNA:   3'- gaCGCGGACUCGC------------AGU--------------UAGCGG-CGUu -5'
12772 3' -57.5 NC_003387.1 + 24517 0.67 0.460799
Target:  5'- gCUGCGCUUgccGAGCugcaGGUCGCCGCc- -3'
miRNA:   3'- -GACGCGGA---CUCGcag-UUAGCGGCGuu -5'
12772 3' -57.5 NC_003387.1 + 21637 0.7 0.294342
Target:  5'- -gGCGUC-GAGCGUCAgcucGUCGaCCGCGg -3'
miRNA:   3'- gaCGCGGaCUCGCAGU----UAGC-GGCGUu -5'
12772 3' -57.5 NC_003387.1 + 21037 0.72 0.251842
Target:  5'- gCUaCGCCUGAccagucgGCGUCGAaCGCCGCGu -3'
miRNA:   3'- -GAcGCGGACU-------CGCAGUUaGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 20196 0.73 0.199045
Target:  5'- gCUGCGCCUcgcacggccGGGCGUgcacgcagcggCAGUCGUCGCAc -3'
miRNA:   3'- -GACGCGGA---------CUCGCA-----------GUUAGCGGCGUu -5'
12772 3' -57.5 NC_003387.1 + 19674 0.66 0.533525
Target:  5'- gUGCaCCUGGGCGUCGAcggcUCGUucgacgccuCGCAGc -3'
miRNA:   3'- gACGcGGACUCGCAGUU----AGCG---------GCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.