miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12774 5' -61 NC_003387.1 + 32612 0.66 0.456946
Target:  5'- gCUCGgGCUCGCcgcggGGGCGCUGAcccuaugaGCcucaAGGAc -3'
miRNA:   3'- -GGGCgCGAGCG-----CCCGUGGCU--------UG----UCCU- -5'
12774 5' -61 NC_003387.1 + 29303 0.66 0.456946
Target:  5'- cCCCG-GCgacCGCGGGCA-CGAGCgccAGGc -3'
miRNA:   3'- -GGGCgCGa--GCGCCCGUgGCUUG---UCCu -5'
12774 5' -61 NC_003387.1 + 1107 0.66 0.456946
Target:  5'- gCCCGCGagCGCGGGUucgGCCGu---GGGu -3'
miRNA:   3'- -GGGCGCgaGCGCCCG---UGGCuuguCCU- -5'
12774 5' -61 NC_003387.1 + 12270 0.66 0.447513
Target:  5'- uCCCGCGcCUgGCGaccGGCGgCCGGaucaGCGGGc -3'
miRNA:   3'- -GGGCGC-GAgCGC---CCGU-GGCU----UGUCCu -5'
12774 5' -61 NC_003387.1 + 19401 0.66 0.447513
Target:  5'- aCCGgGUggaaggacgUCGCGGGCacuuacACCGucccACAGGGc -3'
miRNA:   3'- gGGCgCG---------AGCGCCCG------UGGCu---UGUCCU- -5'
12774 5' -61 NC_003387.1 + 51976 0.66 0.447513
Target:  5'- aUCGCGCcacacgUCGCGcGCACCGAcggcCAGGc -3'
miRNA:   3'- gGGCGCG------AGCGCcCGUGGCUu---GUCCu -5'
12774 5' -61 NC_003387.1 + 52220 0.66 0.447513
Target:  5'- aCCGCGgUcgccaCGCGGGCGCgcaucgcgaCGAGCAGc- -3'
miRNA:   3'- gGGCGCgA-----GCGCCCGUG---------GCUUGUCcu -5'
12774 5' -61 NC_003387.1 + 34846 0.66 0.447513
Target:  5'- gCCCGCGCgggccUUGCGGugagaGCAgCCGGaaauGCAGGu -3'
miRNA:   3'- -GGGCGCG-----AGCGCC-----CGU-GGCU----UGUCCu -5'
12774 5' -61 NC_003387.1 + 31029 0.66 0.447513
Target:  5'- gCCGCGCUCGcCGaGGCgGCCaGGGCGucGGc -3'
miRNA:   3'- gGGCGCGAGC-GC-CCG-UGG-CUUGU--CCu -5'
12774 5' -61 NC_003387.1 + 983 0.66 0.447513
Target:  5'- gCCGcCGC-CGa-GGCGCCGAcCGGGGu -3'
miRNA:   3'- gGGC-GCGaGCgcCCGUGGCUuGUCCU- -5'
12774 5' -61 NC_003387.1 + 51475 0.66 0.438189
Target:  5'- gUCCGUcgGCUUcgGUGGcGUACCGGccaGCAGGAu -3'
miRNA:   3'- -GGGCG--CGAG--CGCC-CGUGGCU---UGUCCU- -5'
12774 5' -61 NC_003387.1 + 42479 0.66 0.428977
Target:  5'- gCCCGCGCUCgGCGcGGCucAUCGcguCGcGGAu -3'
miRNA:   3'- -GGGCGCGAG-CGC-CCG--UGGCuu-GU-CCU- -5'
12774 5' -61 NC_003387.1 + 18413 0.66 0.428977
Target:  5'- gCCGCGggcagCGCGGGCuGCuCGGGCAGc- -3'
miRNA:   3'- gGGCGCga---GCGCCCG-UG-GCUUGUCcu -5'
12774 5' -61 NC_003387.1 + 20928 0.66 0.41988
Target:  5'- aCCCGUucgucuauuacGUUCccgaggGCGGGUcauCCGGGCAGGGg -3'
miRNA:   3'- -GGGCG-----------CGAG------CGCCCGu--GGCUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 15984 0.66 0.41988
Target:  5'- gCCCagGCGCUCGCagacGGCgucgagGCCGGGCAGc- -3'
miRNA:   3'- -GGG--CGCGAGCGc---CCG------UGGCUUGUCcu -5'
12774 5' -61 NC_003387.1 + 18659 0.66 0.41988
Target:  5'- gCCUGCGCUCcUGGGCGCU---UAGGc -3'
miRNA:   3'- -GGGCGCGAGcGCCCGUGGcuuGUCCu -5'
12774 5' -61 NC_003387.1 + 49783 0.66 0.41988
Target:  5'- -aCGCGCU-GCGGGUuggcGCCGAACcGcGAc -3'
miRNA:   3'- ggGCGCGAgCGCCCG----UGGCUUGuC-CU- -5'
12774 5' -61 NC_003387.1 + 10105 0.66 0.418977
Target:  5'- gCUCGgGCUgcaUGgGGGCgagggucACCGGGCGGGGc -3'
miRNA:   3'- -GGGCgCGA---GCgCCCG-------UGGCUUGUCCU- -5'
12774 5' -61 NC_003387.1 + 23257 0.66 0.410901
Target:  5'- gCCC-UGCUCGCuGGCGCCGuucucgaucGCgAGGAu -3'
miRNA:   3'- -GGGcGCGAGCGcCCGUGGCu--------UG-UCCU- -5'
12774 5' -61 NC_003387.1 + 44799 0.67 0.402043
Target:  5'- gCCCGCGCgauccUCGaCGGGCugACCGAcgucguguGGAu -3'
miRNA:   3'- -GGGCGCG-----AGC-GCCCG--UGGCUugu-----CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.