miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12780 5' -59.6 NC_003387.1 + 26489 0.66 0.497104
Target:  5'- aCGGcGAUCGcCGGGGCGACgCUgugaaugaagCGCCGc -3'
miRNA:   3'- cGUC-CUAGUcGCCCCGCUG-GA----------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 45620 0.66 0.491101
Target:  5'- uGCAGGAgUCGGCGuacGGCGaggcgaagaucggccGCCUggCGCCGa -3'
miRNA:   3'- -CGUCCU-AGUCGCc--CCGC---------------UGGA--GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 34704 0.66 0.487117
Target:  5'- gGCcuGGUaCAuGCGGcGCGACCUgGCCGa -3'
miRNA:   3'- -CGucCUA-GU-CGCCcCGCUGGAgUGGC- -5'
12780 5' -59.6 NC_003387.1 + 31262 0.66 0.477226
Target:  5'- cGCGGGcugcgcCAGCGGGGCcggguuaguuGACCa-GCCGu -3'
miRNA:   3'- -CGUCCua----GUCGCCCCG----------CUGGagUGGC- -5'
12780 5' -59.6 NC_003387.1 + 5830 0.66 0.467435
Target:  5'- cGCAa----GGCGGcGGCGGCCUCAaguCCGg -3'
miRNA:   3'- -CGUccuagUCGCC-CCGCUGGAGU---GGC- -5'
12780 5' -59.6 NC_003387.1 + 26257 0.66 0.467435
Target:  5'- uGCugauGGUCAGCauGGGCGugCUCgACCGc -3'
miRNA:   3'- -CGuc--CUAGUCGc-CCCGCugGAG-UGGC- -5'
12780 5' -59.6 NC_003387.1 + 50174 0.66 0.467435
Target:  5'- gGCgAGGAUCuGCcGcGGCGACCgcgugcggaaCACCGg -3'
miRNA:   3'- -CG-UCCUAGuCGcC-CCGCUGGa---------GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 21944 0.66 0.457749
Target:  5'- gGCGGGggCGGCGGcaGGCGuCUgcggCGCUGu -3'
miRNA:   3'- -CGUCCuaGUCGCC--CCGCuGGa---GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 51303 0.66 0.457749
Target:  5'- cCAGcucGUCGGCGGcGGCG-CCUCGCa- -3'
miRNA:   3'- cGUCc--UAGUCGCC-CCGCuGGAGUGgc -5'
12780 5' -59.6 NC_003387.1 + 50946 0.67 0.448171
Target:  5'- uGCGGGcuuUCAGCucGGGCG-CCagCGCCGc -3'
miRNA:   3'- -CGUCCu--AGUCGc-CCCGCuGGa-GUGGC- -5'
12780 5' -59.6 NC_003387.1 + 16480 0.67 0.448171
Target:  5'- aGCAGGG-CAGCGGGuCGGCgUaCACgGu -3'
miRNA:   3'- -CGUCCUaGUCGCCCcGCUGgA-GUGgC- -5'
12780 5' -59.6 NC_003387.1 + 51705 0.67 0.438705
Target:  5'- uCAaGAUguGCGGGGCGAUCUUGUCGc -3'
miRNA:   3'- cGUcCUAguCGCCCCGCUGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 10121 0.67 0.429355
Target:  5'- gGCgAGGGUCaccgGGCGGGGCucGGCCUUcucCCa -3'
miRNA:   3'- -CG-UCCUAG----UCGCCCCG--CUGGAGu--GGc -5'
12780 5' -59.6 NC_003387.1 + 20063 0.67 0.423801
Target:  5'- gGUAGGGcUCAGUGGcacaaggugaacgacGGCGACCgcucugugaUCGCCa -3'
miRNA:   3'- -CGUCCU-AGUCGCC---------------CCGCUGG---------AGUGGc -5'
12780 5' -59.6 NC_003387.1 + 43822 0.67 0.42104
Target:  5'- uGCAcGAUCGGCGaGGGCGagGCCgaggucggggcggugCACCa -3'
miRNA:   3'- -CGUcCUAGUCGC-CCCGC--UGGa--------------GUGGc -5'
12780 5' -59.6 NC_003387.1 + 21633 0.67 0.420122
Target:  5'- gGCAGGcgucgagcGUCAgcucgucgaccGCGGcGGCGGCCgagcacguguUCGCCGa -3'
miRNA:   3'- -CGUCC--------UAGU-----------CGCC-CCGCUGG----------AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 36576 0.67 0.419206
Target:  5'- uCGGGAUCGaCGGGGCGguGCCcagcagcUUGCCGa -3'
miRNA:   3'- cGUCCUAGUcGCCCCGC--UGG-------AGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 25273 0.67 0.408302
Target:  5'- gGCAGGucgcacaucgggcaGUCAGCcaGGGCGACgUCGgCGc -3'
miRNA:   3'- -CGUCC--------------UAGUCGc-CCCGCUGgAGUgGC- -5'
12780 5' -59.6 NC_003387.1 + 18901 0.68 0.392283
Target:  5'- uCGGGAUCuugcccAGCGGGaugcccuGCG-CCUCAUCGg -3'
miRNA:   3'- cGUCCUAG------UCGCCC-------CGCuGGAGUGGC- -5'
12780 5' -59.6 NC_003387.1 + 19741 0.68 0.375824
Target:  5'- uGCcGGGUaCGaaGGucGGCGGCCUCGCCGg -3'
miRNA:   3'- -CGuCCUA-GUcgCC--CCGCUGGAGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.