miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 27141 0.66 0.376208
Target:  5'- -cCGUGCccgccggggucGGCGCCGCCggggaaCGUGuGCCc -3'
miRNA:   3'- gaGCGCG-----------UCGCGGCGGga----GCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 48704 0.66 0.376208
Target:  5'- cCUCGCGCuuGGCGuuGUCgagcacCGUGcGCCg -3'
miRNA:   3'- -GAGCGCG--UCGCggCGGga----GCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 31019 0.66 0.376208
Target:  5'- gUCgGCGCGG-GCCGCgCUCGccGAGgCg -3'
miRNA:   3'- gAG-CGCGUCgCGGCGgGAGCa-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 2336 0.66 0.376208
Target:  5'- gCUCgGCGguGUcgagGCCGCCgUCGgcgucGAGCg -3'
miRNA:   3'- -GAG-CGCguCG----CGGCGGgAGCa----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 15076 0.66 0.376208
Target:  5'- gUCGUGaCGGCGaCGCUgUUG-GAGCCc -3'
miRNA:   3'- gAGCGC-GUCGCgGCGGgAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 47796 0.66 0.376208
Target:  5'- gCUUGCGCGGguCGaCCuuGCCCUCGUacuugcguuuGAGCa -3'
miRNA:   3'- -GAGCGCGUC--GC-GG--CGGGAGCA----------CUCGg -5'
12784 3' -62.3 NC_003387.1 + 25460 0.66 0.375366
Target:  5'- cCUCGCGCGaccaggcaugccGgGCCGCCUcgaccgcgCGUGucagcucGGCCg -3'
miRNA:   3'- -GAGCGCGU------------CgCGGCGGGa-------GCAC-------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 28529 0.66 0.375366
Target:  5'- -gUGCGCcgucauaGGUGCCGCUgUUuUGGGCCu -3'
miRNA:   3'- gaGCGCG-------UCGCGGCGGgAGcACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 2239 0.66 0.367848
Target:  5'- --aGCGuCAGCcaguuGCCGacgaCCUCGcGGGCCg -3'
miRNA:   3'- gagCGC-GUCG-----CGGCg---GGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 2967 0.66 0.367848
Target:  5'- -aCGCGCAuGgGCCuCgCUCG-GGGCCu -3'
miRNA:   3'- gaGCGCGU-CgCGGcGgGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 52052 0.66 0.367848
Target:  5'- cCUCGCuaAGCGUCGCCgUCGaaugguucaucGGGCg -3'
miRNA:   3'- -GAGCGcgUCGCGGCGGgAGCa----------CUCGg -5'
12784 3' -62.3 NC_003387.1 + 39012 0.66 0.367848
Target:  5'- aUCGCcCuGCGCCGCC----UGGGCCg -3'
miRNA:   3'- gAGCGcGuCGCGGCGGgagcACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 19399 0.66 0.359617
Target:  5'- gUUGUGCAGCGUCGUgcgggCCUUGaugccaaGGGCCu -3'
miRNA:   3'- gAGCGCGUCGCGGCG-----GGAGCa------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 17491 0.66 0.359617
Target:  5'- aCUUGCG-GGCGCCGCggCCguaGUGcucGGCCa -3'
miRNA:   3'- -GAGCGCgUCGCGGCG--GGag-CAC---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 20792 0.66 0.359617
Target:  5'- --gGCGCGGauCUGCUCg-GUGAGCCa -3'
miRNA:   3'- gagCGCGUCgcGGCGGGagCACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 15351 0.66 0.359617
Target:  5'- --aGCGgGGCGCCGCCgCcCGacagGuGCCg -3'
miRNA:   3'- gagCGCgUCGCGGCGG-GaGCa---CuCGG- -5'
12784 3' -62.3 NC_003387.1 + 14670 0.66 0.359617
Target:  5'- gCUCGCuCAGCcaCCGCCCgaUCG-GGGCg -3'
miRNA:   3'- -GAGCGcGUCGc-GGCGGG--AGCaCUCGg -5'
12784 3' -62.3 NC_003387.1 + 45767 0.66 0.359617
Target:  5'- -gCGCGCuguGGCGCCuGCCCgccgcugCGcaGGCCg -3'
miRNA:   3'- gaGCGCG---UCGCGG-CGGGa------GCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 29790 0.66 0.357987
Target:  5'- gCUUGCGCguguauccGGCGCCGCUaauuucggucgCGUuGGCCg -3'
miRNA:   3'- -GAGCGCG--------UCGCGGCGGga---------GCAcUCGG- -5'
12784 3' -62.3 NC_003387.1 + 16919 0.66 0.351516
Target:  5'- aUCGCGCcgacGGCGCCGaggcacagCUCG-GGGCUg -3'
miRNA:   3'- gAGCGCG----UCGCGGCgg------GAGCaCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.