miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 34511 0.71 0.155052
Target:  5'- -cCGCuGCGGCGCCGCgauCCUCGggcuGCCc -3'
miRNA:   3'- gaGCG-CGUCGCGGCG---GGAGCacu-CGG- -5'
12784 3' -62.3 NC_003387.1 + 34146 0.67 0.298481
Target:  5'- aCUCGacgaGCaccagGGCGUCGCCCUCG---GCCu -3'
miRNA:   3'- -GAGCg---CG-----UCGCGGCGGGAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 33558 0.67 0.305662
Target:  5'- -cCGUGCGG-GCCgcGCCCUCGacagcgucgacGAGCCa -3'
miRNA:   3'- gaGCGCGUCgCGG--CGGGAGCa----------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 33201 0.71 0.167715
Target:  5'- aUCGCGCAGCGCaagcgcgagGCCCgcUCGgcgauGGCCg -3'
miRNA:   3'- gAGCGCGUCGCGg--------CGGG--AGCac---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 32825 0.66 0.343545
Target:  5'- uCUCaGCGCAGC-CCGCaCCgCG-GGGCg -3'
miRNA:   3'- -GAG-CGCGUCGcGGCG-GGaGCaCUCGg -5'
12784 3' -62.3 NC_003387.1 + 32618 0.71 0.155052
Target:  5'- gCUCGcCGCgggGGCGCUGaCCCUa-UGAGCCu -3'
miRNA:   3'- -GAGC-GCG---UCGCGGC-GGGAgcACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 32544 0.7 0.186037
Target:  5'- -aCG-GCGGCGCCGUCCggUGgcGAGCCg -3'
miRNA:   3'- gaGCgCGUCGCGGCGGGa-GCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 32544 0.68 0.277723
Target:  5'- -gCGCaGCAGCGCaucaaccgCGCCCUCGac-GCCc -3'
miRNA:   3'- gaGCG-CGUCGCG--------GCGGGAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 31208 0.69 0.24571
Target:  5'- aCUCaGCGCAGCgGCCGgC-UCGUGcAGCg -3'
miRNA:   3'- -GAG-CGCGUCG-CGGCgGgAGCAC-UCGg -5'
12784 3' -62.3 NC_003387.1 + 31131 0.71 0.176665
Target:  5'- --aGCGCcGCGUCGgCCUCGcUGAuGCCg -3'
miRNA:   3'- gagCGCGuCGCGGCgGGAGC-ACU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 31019 0.66 0.376208
Target:  5'- gUCgGCGCGG-GCCGCgCUCGccGAGgCg -3'
miRNA:   3'- gAG-CGCGUCgCGGCGgGAGCa-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 30862 0.69 0.24571
Target:  5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3'
miRNA:   3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 30532 0.67 0.305662
Target:  5'- gCUUGgGUGGCccacccgauaccGCCGCCCcCGccUGGGCCg -3'
miRNA:   3'- -GAGCgCGUCG------------CGGCGGGaGC--ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 30183 0.7 0.206101
Target:  5'- -cCGCGUcGaGCCaGCCCUCGgccUGGGCCa -3'
miRNA:   3'- gaGCGCGuCgCGG-CGGGAGC---ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 30034 0.68 0.251858
Target:  5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3'
miRNA:   3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 29790 0.66 0.357987
Target:  5'- gCUUGCGCguguauccGGCGCCGCUaauuucggucgCGUuGGCCg -3'
miRNA:   3'- -GAGCGCG--------UCGCGGCGGga---------GCAcUCGG- -5'
12784 3' -62.3 NC_003387.1 + 29743 0.66 0.351516
Target:  5'- gUCGU-CGGCGCCGCCCgacaCGaUGA-CCg -3'
miRNA:   3'- gAGCGcGUCGCGGCGGGa---GC-ACUcGG- -5'
12784 3' -62.3 NC_003387.1 + 29310 0.67 0.312975
Target:  5'- -aUGaCGCAgGCGCCGCgCUUGUcGGGCa -3'
miRNA:   3'- gaGC-GCGU-CGCGGCGgGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 29036 0.68 0.277723
Target:  5'- gCUCGCGUuGUauccgGCCGCCU---UGAGCCg -3'
miRNA:   3'- -GAGCGCGuCG-----CGGCGGGagcACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 28577 0.68 0.251858
Target:  5'- -cCGCGuUGGCGuuGUCCUCGggcaGGCCg -3'
miRNA:   3'- gaGCGC-GUCGCggCGGGAGCac--UCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.