Results 41 - 60 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12784 | 3' | -62.3 | NC_003387.1 | + | 34511 | 0.71 | 0.155052 |
Target: 5'- -cCGCuGCGGCGCCGCgauCCUCGggcuGCCc -3' miRNA: 3'- gaGCG-CGUCGCGGCG---GGAGCacu-CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 34146 | 0.67 | 0.298481 |
Target: 5'- aCUCGacgaGCaccagGGCGUCGCCCUCG---GCCu -3' miRNA: 3'- -GAGCg---CG-----UCGCGGCGGGAGCacuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 33558 | 0.67 | 0.305662 |
Target: 5'- -cCGUGCGG-GCCgcGCCCUCGacagcgucgacGAGCCa -3' miRNA: 3'- gaGCGCGUCgCGG--CGGGAGCa----------CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 33201 | 0.71 | 0.167715 |
Target: 5'- aUCGCGCAGCGCaagcgcgagGCCCgcUCGgcgauGGCCg -3' miRNA: 3'- gAGCGCGUCGCGg--------CGGG--AGCac---UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 32825 | 0.66 | 0.343545 |
Target: 5'- uCUCaGCGCAGC-CCGCaCCgCG-GGGCg -3' miRNA: 3'- -GAG-CGCGUCGcGGCG-GGaGCaCUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 32618 | 0.71 | 0.155052 |
Target: 5'- gCUCGcCGCgggGGCGCUGaCCCUa-UGAGCCu -3' miRNA: 3'- -GAGC-GCG---UCGCGGC-GGGAgcACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 32544 | 0.7 | 0.186037 |
Target: 5'- -aCG-GCGGCGCCGUCCggUGgcGAGCCg -3' miRNA: 3'- gaGCgCGUCGCGGCGGGa-GCa-CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 32544 | 0.68 | 0.277723 |
Target: 5'- -gCGCaGCAGCGCaucaaccgCGCCCUCGac-GCCc -3' miRNA: 3'- gaGCG-CGUCGCG--------GCGGGAGCacuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 31208 | 0.69 | 0.24571 |
Target: 5'- aCUCaGCGCAGCgGCCGgC-UCGUGcAGCg -3' miRNA: 3'- -GAG-CGCGUCG-CGGCgGgAGCAC-UCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 31131 | 0.71 | 0.176665 |
Target: 5'- --aGCGCcGCGUCGgCCUCGcUGAuGCCg -3' miRNA: 3'- gagCGCGuCGCGGCgGGAGC-ACU-CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 31019 | 0.66 | 0.376208 |
Target: 5'- gUCgGCGCGG-GCCGCgCUCGccGAGgCg -3' miRNA: 3'- gAG-CGCGUCgCGGCGgGAGCa-CUCgG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30862 | 0.69 | 0.24571 |
Target: 5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3' miRNA: 3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30532 | 0.67 | 0.305662 |
Target: 5'- gCUUGgGUGGCccacccgauaccGCCGCCCcCGccUGGGCCg -3' miRNA: 3'- -GAGCgCGUCG------------CGGCGGGaGC--ACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30183 | 0.7 | 0.206101 |
Target: 5'- -cCGCGUcGaGCCaGCCCUCGgccUGGGCCa -3' miRNA: 3'- gaGCGCGuCgCGG-CGGGAGC---ACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30034 | 0.68 | 0.251858 |
Target: 5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3' miRNA: 3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29790 | 0.66 | 0.357987 |
Target: 5'- gCUUGCGCguguauccGGCGCCGCUaauuucggucgCGUuGGCCg -3' miRNA: 3'- -GAGCGCG--------UCGCGGCGGga---------GCAcUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29743 | 0.66 | 0.351516 |
Target: 5'- gUCGU-CGGCGCCGCCCgacaCGaUGA-CCg -3' miRNA: 3'- gAGCGcGUCGCGGCGGGa---GC-ACUcGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29310 | 0.67 | 0.312975 |
Target: 5'- -aUGaCGCAgGCGCCGCgCUUGUcGGGCa -3' miRNA: 3'- gaGC-GCGU-CGCGGCGgGAGCA-CUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29036 | 0.68 | 0.277723 |
Target: 5'- gCUCGCGUuGUauccgGCCGCCU---UGAGCCg -3' miRNA: 3'- -GAGCGCGuCG-----CGGCGGGagcACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 28577 | 0.68 | 0.251858 |
Target: 5'- -cCGCGuUGGCGuuGUCCUCGggcaGGCCg -3' miRNA: 3'- gaGCGC-GUCGCggCGGGAGCac--UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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