Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12784 | 3' | -62.3 | NC_003387.1 | + | 6763 | 0.68 | 0.284512 |
Target: 5'- --aGCGCA-CGCCucGCCCUUGcgcGGGCCg -3' miRNA: 3'- gagCGCGUcGCGG--CGGGAGCa--CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 11890 | 0.68 | 0.277723 |
Target: 5'- gUCGCGCacgaucGGCGCCG-UCUUGUGcccuuuGGCCu -3' miRNA: 3'- gAGCGCG------UCGCGGCgGGAGCAC------UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 51075 | 0.68 | 0.277723 |
Target: 5'- cCUCGaCGUGGCgGCCGUCgUCGUccaucAGCCa -3' miRNA: 3'- -GAGC-GCGUCG-CGGCGGgAGCAc----UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29036 | 0.68 | 0.277723 |
Target: 5'- gCUCGCGUuGUauccgGCCGCCU---UGAGCCg -3' miRNA: 3'- -GAGCGCGuCG-----CGGCGGGagcACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 21600 | 0.68 | 0.271064 |
Target: 5'- uCUCGgGCGGCGCCcaccugGCgCUCGgGGGUg -3' miRNA: 3'- -GAGCgCGUCGCGG------CGgGAGCaCUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 11619 | 0.68 | 0.271064 |
Target: 5'- gUCGUGCAGCGCCaGCagCUCGc-GGCUc -3' miRNA: 3'- gAGCGCGUCGCGG-CGg-GAGCacUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 35159 | 0.68 | 0.271064 |
Target: 5'- --aGCGgGGCGUuguCGCCCUUGUcacccuucGGGCCg -3' miRNA: 3'- gagCGCgUCGCG---GCGGGAGCA--------CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 14976 | 0.68 | 0.267131 |
Target: 5'- gUCGCcgaGCAGCuugccgucgaauguuGCCGCCCUCGgcuuGUCg -3' miRNA: 3'- gAGCG---CGUCG---------------CGGCGGGAGCacu-CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 48390 | 0.68 | 0.264534 |
Target: 5'- gUUGCGCugguGCGCC-UUCUCGgcguUGAGCCa -3' miRNA: 3'- gAGCGCGu---CGCGGcGGGAGC----ACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 12196 | 0.68 | 0.258133 |
Target: 5'- cCUCGgGCAG-GUCGCUgCUCGgugccGGGCCa -3' miRNA: 3'- -GAGCgCGUCgCGGCGG-GAGCa----CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 39746 | 0.68 | 0.251858 |
Target: 5'- gCUCGuCGuCGGUgGCCGCCCg-GUacGAGCCg -3' miRNA: 3'- -GAGC-GC-GUCG-CGGCGGGagCA--CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 28577 | 0.68 | 0.251858 |
Target: 5'- -cCGCGuUGGCGuuGUCCUCGggcaGGCCg -3' miRNA: 3'- gaGCGC-GUCGCggCGGGAGCac--UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 15268 | 0.68 | 0.249384 |
Target: 5'- --gGCGCAGCGCCGCCagcauggcaaccgUCGgcggcuugGGGCUc -3' miRNA: 3'- gagCGCGUCGCGGCGGg------------AGCa-------CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 45544 | 0.68 | 0.251238 |
Target: 5'- -cCGUGCGGCaaggcgauccGCCGCCagCUCGUcggcacggccgagGAGCCg -3' miRNA: 3'- gaGCGCGUCG----------CGGCGG--GAGCA-------------CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 3048 | 0.68 | 0.251858 |
Target: 5'- --gGCGCAGgCGuucCCGCCCgccUCGgucGAGCCg -3' miRNA: 3'- gagCGCGUC-GC---GGCGGG---AGCa--CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 694 | 0.68 | 0.251858 |
Target: 5'- gUCGCGCGccacgucauuGCGCCGCaaggcaUCGUGucgacGGCCu -3' miRNA: 3'- gAGCGCGU----------CGCGGCGgg----AGCAC-----UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30034 | 0.68 | 0.251858 |
Target: 5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3' miRNA: 3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 51419 | 0.68 | 0.258133 |
Target: 5'- -gCGCcuGCGGCGCCGCC-UCGaacUGcGCCg -3' miRNA: 3'- gaGCG--CGUCGCGGCGGgAGC---ACuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 32544 | 0.68 | 0.277723 |
Target: 5'- -gCGCaGCAGCGCaucaaccgCGCCCUCGac-GCCc -3' miRNA: 3'- gaGCG-CGUCGCG--------GCGGGAGCacuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 38292 | 0.68 | 0.282461 |
Target: 5'- -cCGCGCGGCggcacGCUGUCgUCGUcguucguguggucuGAGCCg -3' miRNA: 3'- gaGCGCGUCG-----CGGCGGgAGCA--------------CUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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