Results 61 - 80 of 130 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12784 | 3' | -62.3 | NC_003387.1 | + | 26146 | 0.69 | 0.216819 |
Target: 5'- gCUCGCGCGGC-CUGaCCC-CGagGAGUCa -3' miRNA: 3'- -GAGCGCGUCGcGGC-GGGaGCa-CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 26686 | 0.67 | 0.32042 |
Target: 5'- uUCGUGCAGCuCgCGCUgCUCGUcGAcGCCg -3' miRNA: 3'- gAGCGCGUCGcG-GCGG-GAGCA-CU-CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 26809 | 0.67 | 0.313714 |
Target: 5'- -cCGCGCugguggucggugagcGCGCCGCCCUgGac-GCCg -3' miRNA: 3'- gaGCGCGu--------------CGCGGCGGGAgCacuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 27141 | 0.66 | 0.376208 |
Target: 5'- -cCGUGCccgccggggucGGCGCCGCCggggaaCGUGuGCCc -3' miRNA: 3'- gaGCGCG-----------UCGCGGCGGga----GCACuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 27276 | 0.69 | 0.233788 |
Target: 5'- gUCGCGCGaggagaacgccGCacugGCgGCCCUUGaGAGCCg -3' miRNA: 3'- gAGCGCGU-----------CG----CGgCGGGAGCaCUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 27429 | 0.66 | 0.343545 |
Target: 5'- -cCGCGCcGaCGUCGCCCUgGcUGAcuGCCc -3' miRNA: 3'- gaGCGCGuC-GCGGCGGGAgC-ACU--CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 27595 | 0.67 | 0.32042 |
Target: 5'- -gCGCGguGUGCCGCUgguaCGaGGGCCu -3' miRNA: 3'- gaGCGCguCGCGGCGGga--GCaCUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 27850 | 0.71 | 0.172138 |
Target: 5'- --gGCGCAGCcaCCGCCCgagGUcGAGCCa -3' miRNA: 3'- gagCGCGUCGc-GGCGGGag-CA-CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 28024 | 0.7 | 0.200916 |
Target: 5'- --aGCGCGGCaaGCCGaUCCUCGgcGAGCUg -3' miRNA: 3'- gagCGCGUCG--CGGC-GGGAGCa-CUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 28529 | 0.66 | 0.375366 |
Target: 5'- -gUGCGCcgucauaGGUGCCGCUgUUuUGGGCCu -3' miRNA: 3'- gaGCGCG-------UCGCGGCGGgAGcACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 28577 | 0.68 | 0.251858 |
Target: 5'- -cCGCGuUGGCGuuGUCCUCGggcaGGCCg -3' miRNA: 3'- gaGCGC-GUCGCggCGGGAGCac--UCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29036 | 0.68 | 0.277723 |
Target: 5'- gCUCGCGUuGUauccgGCCGCCU---UGAGCCg -3' miRNA: 3'- -GAGCGCGuCG-----CGGCGGGagcACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29310 | 0.67 | 0.312975 |
Target: 5'- -aUGaCGCAgGCGCCGCgCUUGUcGGGCa -3' miRNA: 3'- gaGC-GCGU-CGCGGCGgGAGCA-CUCGg -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29743 | 0.66 | 0.351516 |
Target: 5'- gUCGU-CGGCGCCGCCCgacaCGaUGA-CCg -3' miRNA: 3'- gAGCGcGUCGCGGCGGGa---GC-ACUcGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 29790 | 0.66 | 0.357987 |
Target: 5'- gCUUGCGCguguauccGGCGCCGCUaauuucggucgCGUuGGCCg -3' miRNA: 3'- -GAGCGCG--------UCGCGGCGGga---------GCAcUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30034 | 0.68 | 0.251858 |
Target: 5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3' miRNA: 3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30183 | 0.7 | 0.206101 |
Target: 5'- -cCGCGUcGaGCCaGCCCUCGgccUGGGCCa -3' miRNA: 3'- gaGCGCGuCgCGG-CGGGAGC---ACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30532 | 0.67 | 0.305662 |
Target: 5'- gCUUGgGUGGCccacccgauaccGCCGCCCcCGccUGGGCCg -3' miRNA: 3'- -GAGCgCGUCG------------CGGCGGGaGC--ACUCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 30862 | 0.69 | 0.24571 |
Target: 5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3' miRNA: 3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5' |
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12784 | 3' | -62.3 | NC_003387.1 | + | 31019 | 0.66 | 0.376208 |
Target: 5'- gUCgGCGCGG-GCCGCgCUCGccGAGgCg -3' miRNA: 3'- gAG-CGCGUCgCGGCGgGAGCa-CUCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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