miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 3' -58.5 NC_003387.1 + 504 0.66 0.555215
Target:  5'- --cGCGCCCGCGUGGCGaccGCG-GUUGa -3'
miRNA:   3'- ccaUGCGGGCGUGUCGCc--CGCuCAAC- -5'
12785 3' -58.5 NC_003387.1 + 3143 0.66 0.544692
Target:  5'- aGGccacCGCCCG-GCAGCGGGCGc---- -3'
miRNA:   3'- -CCau--GCGGGCgUGUCGCCCGCucaac -5'
12785 3' -58.5 NC_003387.1 + 17725 0.66 0.544692
Target:  5'- cGGUGCGCCCcgGCcCGGCcGGGCcgccaGGGg-- -3'
miRNA:   3'- -CCAUGCGGG--CGuGUCG-CCCG-----CUCaac -5'
12785 3' -58.5 NC_003387.1 + 10697 0.66 0.544692
Target:  5'- cGGUGgcCGCCgGUAUcaAGcCGGGCGAGc-- -3'
miRNA:   3'- -CCAU--GCGGgCGUG--UC-GCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 39448 0.66 0.544692
Target:  5'- cGGUaucGCGaaCCUGUACgAGCGGGCGcGGUg- -3'
miRNA:   3'- -CCA---UGC--GGGCGUG-UCGCCCGC-UCAac -5'
12785 3' -58.5 NC_003387.1 + 3644 0.66 0.534234
Target:  5'- cGUACGCCUGCGCGccGCGagccugcccGGUGAGc-- -3'
miRNA:   3'- cCAUGCGGGCGUGU--CGC---------CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 31265 0.66 0.523848
Target:  5'- gGGcUGCGCCaGCGgGGcCGGGUuAGUUGa -3'
miRNA:   3'- -CC-AUGCGGgCGUgUC-GCCCGcUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 21471 0.67 0.503317
Target:  5'- uGGcGCaGCCCGCGcCGGuCGGGcCGGGcUGg -3'
miRNA:   3'- -CCaUG-CGGGCGU-GUC-GCCC-GCUCaAC- -5'
12785 3' -58.5 NC_003387.1 + 44622 0.67 0.503317
Target:  5'- -cUGgGCUCGC-CcuCGGGCGGGUUGg -3'
miRNA:   3'- ccAUgCGGGCGuGucGCCCGCUCAAC- -5'
12785 3' -58.5 NC_003387.1 + 28902 0.67 0.5023
Target:  5'- cGGcgcgGCGCCCucacguaucugcuGCGCGGCG-GCGAGg-- -3'
miRNA:   3'- -CCa---UGCGGG-------------CGUGUCGCcCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 29716 0.67 0.493183
Target:  5'- cGGcgGCGCCCaggccgacgacgGCAgCuacGCGGGCGAGcUGg -3'
miRNA:   3'- -CCa-UGCGGG------------CGU-Gu--CGCCCGCUCaAC- -5'
12785 3' -58.5 NC_003387.1 + 33281 0.67 0.492175
Target:  5'- --cGCGCCCGCACGGCcuuaacgcccuguGGGaCGGuGUa- -3'
miRNA:   3'- ccaUGCGGGCGUGUCG-------------CCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 6943 0.67 0.483143
Target:  5'- --cGCgGCCUGCGCAGCG-GCGGGc-- -3'
miRNA:   3'- ccaUG-CGGGCGUGUCGCcCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 38556 0.67 0.483143
Target:  5'- --cACGCCCGCGgccCGGCccGGCGAGg-- -3'
miRNA:   3'- ccaUGCGGGCGU---GUCGc-CCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 35627 0.67 0.483143
Target:  5'- aGGa--GCCCGCcgagGCGGcCGGGCGGGc-- -3'
miRNA:   3'- -CCaugCGGGCG----UGUC-GCCCGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 8771 0.67 0.483143
Target:  5'- cGGgccuuCGCCgUGCgGCGGCGGGCGAccUGa -3'
miRNA:   3'- -CCau---GCGG-GCG-UGUCGCCCGCUcaAC- -5'
12785 3' -58.5 NC_003387.1 + 4559 0.67 0.473203
Target:  5'- -cUGCGCCUGCGCGaccgcGCGGGCcucGGUg- -3'
miRNA:   3'- ccAUGCGGGCGUGU-----CGCCCGc--UCAac -5'
12785 3' -58.5 NC_003387.1 + 4258 0.67 0.473203
Target:  5'- --aACGUCUGCgACAGCGGGuCGAcGUa- -3'
miRNA:   3'- ccaUGCGGGCG-UGUCGCCC-GCU-CAac -5'
12785 3' -58.5 NC_003387.1 + 43708 0.67 0.473203
Target:  5'- --gGCGCCCGCcaggugcucgACGGCGGcauGCGGGa-- -3'
miRNA:   3'- ccaUGCGGGCG----------UGUCGCC---CGCUCaac -5'
12785 3' -58.5 NC_003387.1 + 23326 0.67 0.463367
Target:  5'- -cUGCGCCCG----GCGGGCGAGa-- -3'
miRNA:   3'- ccAUGCGGGCguguCGCCCGCUCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.