miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 3' -56.1 NC_003387.1 + 27213 0.66 0.706379
Target:  5'- cCGGCGAUCAgCUUGGacuugaacCGCUGCagGUCGc -3'
miRNA:   3'- -GCCGUUAGUgGAGCUa-------GCGGCG--CAGC- -5'
12787 3' -56.1 NC_003387.1 + 10779 0.66 0.706379
Target:  5'- gCGGCcugCAUCgUCgGGUCGUCGgCGUCGg -3'
miRNA:   3'- -GCCGuuaGUGG-AG-CUAGCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 11239 0.66 0.706379
Target:  5'- aCGGCAugaaaaagGUCAUugaCUUuuUCgGCCGCGUCGg -3'
miRNA:   3'- -GCCGU--------UAGUG---GAGcuAG-CGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 12976 0.66 0.705317
Target:  5'- uCGGCGAgcugguCgUCGAUaaucucgCGCUGCGUCGu -3'
miRNA:   3'- -GCCGUUagu---GgAGCUA-------GCGGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 12183 0.66 0.695726
Target:  5'- uCGGgGGUCAcgcCCUCGGgcaggUCGCUGC-UCGg -3'
miRNA:   3'- -GCCgUUAGU---GGAGCU-----AGCGGCGcAGC- -5'
12787 3' -56.1 NC_003387.1 + 48299 0.66 0.695726
Target:  5'- nGGCGAaCGCCUUGcccaGCUcgGCGUCGa -3'
miRNA:   3'- gCCGUUaGUGGAGCuag-CGG--CGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 9880 0.66 0.685013
Target:  5'- -uGCAcg-ACCUCGAUCGCCGCcaugaUCGc -3'
miRNA:   3'- gcCGUuagUGGAGCUAGCGGCGc----AGC- -5'
12787 3' -56.1 NC_003387.1 + 43282 0.66 0.685013
Target:  5'- uGGCGcagaaCAgCUCGG-CGcCCGCGUCGu -3'
miRNA:   3'- gCCGUua---GUgGAGCUaGC-GGCGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 44966 0.66 0.674251
Target:  5'- gCGGCucagGCCgCGAUCGCCGCuGcCGc -3'
miRNA:   3'- -GCCGuuagUGGaGCUAGCGGCG-CaGC- -5'
12787 3' -56.1 NC_003387.1 + 1525 0.66 0.674251
Target:  5'- aGGCucagCACCUCGGugccgaggaUCGCCagGCGUaCGu -3'
miRNA:   3'- gCCGuua-GUGGAGCU---------AGCGG--CGCA-GC- -5'
12787 3' -56.1 NC_003387.1 + 46962 0.66 0.674251
Target:  5'- aGGCGAUCAgCUCG-UCGgCCgagGCGUUc -3'
miRNA:   3'- gCCGUUAGUgGAGCuAGC-GG---CGCAGc -5'
12787 3' -56.1 NC_003387.1 + 13401 0.66 0.674251
Target:  5'- gCGGUGAUCACagcaCGcccUCGCCGuUGUCGg -3'
miRNA:   3'- -GCCGUUAGUGga--GCu--AGCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 23020 0.66 0.674251
Target:  5'- gGGCGccgccgagCGCCUCGAccUCGgCCaCGUCGa -3'
miRNA:   3'- gCCGUua------GUGGAGCU--AGC-GGcGCAGC- -5'
12787 3' -56.1 NC_003387.1 + 51392 0.66 0.674251
Target:  5'- uCGGCGGaaAUCUCGAcguacccgacgUCGUCGaCGUCGc -3'
miRNA:   3'- -GCCGUUagUGGAGCU-----------AGCGGC-GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 12093 0.66 0.66345
Target:  5'- cCGGCAagAUCACCUCG---GCCGCu--- -3'
miRNA:   3'- -GCCGU--UAGUGGAGCuagCGGCGcagc -5'
12787 3' -56.1 NC_003387.1 + 11960 0.66 0.66345
Target:  5'- aGGCg--CACCUCGGUguaucgacgccCGCCuuGUCGa -3'
miRNA:   3'- gCCGuuaGUGGAGCUA-----------GCGGcgCAGC- -5'
12787 3' -56.1 NC_003387.1 + 14149 0.66 0.66345
Target:  5'- aCGGCAAgguguggCACCUCGccgggccggGCCGCGggCGu -3'
miRNA:   3'- -GCCGUUa------GUGGAGCuag------CGGCGCa-GC- -5'
12787 3' -56.1 NC_003387.1 + 50387 0.66 0.662368
Target:  5'- aCGGCG---GCCUCGAcacCGCCGagcuguaCGUCGg -3'
miRNA:   3'- -GCCGUuagUGGAGCUa--GCGGC-------GCAGC- -5'
12787 3' -56.1 NC_003387.1 + 41584 0.67 0.652621
Target:  5'- aGGC----GCCUUGAUCGCgGCGgUCa -3'
miRNA:   3'- gCCGuuagUGGAGCUAGCGgCGC-AGc -5'
12787 3' -56.1 NC_003387.1 + 20976 0.67 0.652621
Target:  5'- gGGCAA-CGCCgCGAaUGCCGCGa-- -3'
miRNA:   3'- gCCGUUaGUGGaGCUaGCGGCGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.