miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 5' -63.9 NC_003387.1 + 24566 0.66 0.330466
Target:  5'- gGCGaGCCGAgcugGCCgGGCUCG-AUCGUgGg -3'
miRNA:   3'- -UGC-CGGCU----UGGgCCGGGCgUAGCGgC- -5'
12791 5' -63.9 NC_003387.1 + 7088 0.66 0.294204
Target:  5'- gGCGGCCGAuCUUcGCCuCGCcGUaCGCCGa -3'
miRNA:   3'- -UGCCGGCUuGGGcCGG-GCG-UA-GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 21993 0.66 0.286655
Target:  5'- gACGaGCCGGgucaccuGCCCGGCugagcgccCCGCAggCGCaCGa -3'
miRNA:   3'- -UGC-CGGCU-------UGGGCCG--------GGCGUa-GCG-GC- -5'
12791 5' -63.9 NC_003387.1 + 6222 0.66 0.287335
Target:  5'- -gGGCCaa--CCGGaCCCuCGUCGCCGa -3'
miRNA:   3'- ugCCGGcuugGGCC-GGGcGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 19341 0.66 0.287335
Target:  5'- cGCGGCgaGAACCUGGCCgGgCgggcucugGUUGCCa -3'
miRNA:   3'- -UGCCGg-CUUGGGCCGGgC-G--------UAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 22678 0.66 0.290068
Target:  5'- aACGGCCGAGCggguuUCGuagcacgugcgccucGCCCGUAgcuaacCGCCGg -3'
miRNA:   3'- -UGCCGGCUUG-----GGC---------------CGGGCGUa-----GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 2463 0.66 0.294204
Target:  5'- -aGGCCGAggugcaccGCCCGGCgcugaCGUAcggCGCCu -3'
miRNA:   3'- ugCCGGCU--------UGGGCCGg----GCGUa--GCGGc -5'
12791 5' -63.9 NC_003387.1 + 7213 0.66 0.300495
Target:  5'- gUGGCCGcggugcuGACCCGGCCgaCGCAaauccUGCCu -3'
miRNA:   3'- uGCCGGC-------UUGGGCCGG--GCGUa----GCGGc -5'
12791 5' -63.9 NC_003387.1 + 28121 0.66 0.301201
Target:  5'- gGC-GCUGAucGCCgaGGCCCGCAagCGCCc -3'
miRNA:   3'- -UGcCGGCU--UGGg-CCGGGCGUa-GCGGc -5'
12791 5' -63.9 NC_003387.1 + 7640 0.66 0.304035
Target:  5'- gGCcGCCGAACaCCGGCCCaggacggcccucgacGCGcUCGgCGa -3'
miRNA:   3'- -UGcCGGCUUG-GGCCGGG---------------CGU-AGCgGC- -5'
12791 5' -63.9 NC_003387.1 + 9981 0.66 0.308325
Target:  5'- cGCaGCCGAuccgagcacGCCCugacgagcaGGUCgGCGUUGCCGg -3'
miRNA:   3'- -UGcCGGCU---------UGGG---------CCGGgCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 44914 0.66 0.308325
Target:  5'- uCGGCCGccaggcguugcAGCUCGGCCUGCAccucgggcagcUUGCgGa -3'
miRNA:   3'- uGCCGGC-----------UUGGGCCGGGCGU-----------AGCGgC- -5'
12791 5' -63.9 NC_003387.1 + 52222 0.66 0.322957
Target:  5'- cGCGGUCGccACgCgGGCgCGCAUCGCg- -3'
miRNA:   3'- -UGCCGGCu-UG-GgCCGgGCGUAGCGgc -5'
12791 5' -63.9 NC_003387.1 + 14539 0.66 0.322957
Target:  5'- gGCGGCCGGGCCguUGcGCuuGUAcUGCUGa -3'
miRNA:   3'- -UGCCGGCUUGG--GC-CGggCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 48949 0.66 0.322957
Target:  5'- gGCGGgCGGgcuGCUCGGCguaccaCUGCGUCGUCa -3'
miRNA:   3'- -UGCCgGCU---UGGGCCG------GGCGUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 31352 0.66 0.322957
Target:  5'- -gGGUCGAACagcaCCGGCCaggGCAgCGUCGg -3'
miRNA:   3'- ugCCGGCUUG----GGCCGGg--CGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 9840 0.66 0.322957
Target:  5'- cUGGCC---CCCGGCCU-UGUCGCCGu -3'
miRNA:   3'- uGCCGGcuuGGGCCGGGcGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1952 0.66 0.315577
Target:  5'- cCGGCCgcGggUCUGGCCgGgCAgCGCCa -3'
miRNA:   3'- uGCCGG--CuuGGGCCGGgC-GUaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 26143 0.66 0.31121
Target:  5'- cACGaGCCagcauGCCCGGCaCCGCccgcaagggcgucauGUCGUCGc -3'
miRNA:   3'- -UGC-CGGcu---UGGGCCG-GGCG---------------UAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 47193 0.66 0.308325
Target:  5'- --cGCCGAACUUcGCCCGC-UCGCgGg -3'
miRNA:   3'- ugcCGGCUUGGGcCGGGCGuAGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.