miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 5' -63.9 NC_003387.1 + 42194 1.08 0.000198
Target:  5'- gACGGCCGAACCCGGCCCGCAUCGCCGa -3'
miRNA:   3'- -UGCCGGCUUGGGCCGGGCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 7824 0.85 0.012754
Target:  5'- gGCGGCCGAggucGCCCGGCgCGCAggcggaaUCGCCGa -3'
miRNA:   3'- -UGCCGGCU----UGGGCCGgGCGU-------AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 50004 0.82 0.022367
Target:  5'- gUGGCCu-GCCCGccGCCCGCGUCGCCGa -3'
miRNA:   3'- uGCCGGcuUGGGC--CGGGCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 50462 0.81 0.026435
Target:  5'- uCGaGCCGAcCCCGGCCCGCGaggUCGUCGg -3'
miRNA:   3'- uGC-CGGCUuGGGCCGGGCGU---AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 45579 0.79 0.032108
Target:  5'- cACGGCCGAggaGCCgGGCCuCGCGUgGCUGa -3'
miRNA:   3'- -UGCCGGCU---UGGgCCGG-GCGUAgCGGC- -5'
12791 5' -63.9 NC_003387.1 + 40436 0.79 0.033938
Target:  5'- cCGGCCcGGCCCGGCCUGaCAgCGCCGa -3'
miRNA:   3'- uGCCGGcUUGGGCCGGGC-GUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 51615 0.79 0.035871
Target:  5'- cACGGCCGAACCCGcGCUCGCGggCaCCGa -3'
miRNA:   3'- -UGCCGGCUUGGGC-CGGGCGUa-GcGGC- -5'
12791 5' -63.9 NC_003387.1 + 12294 0.78 0.038974
Target:  5'- -aGGCCGGGCCgGGCCgGUucgccGUCGCCGa -3'
miRNA:   3'- ugCCGGCUUGGgCCGGgCG-----UAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 40426 0.78 0.041991
Target:  5'- uCGuGCCGGuGCCCGGCCCGCugauccggccgccgGUCGCCa -3'
miRNA:   3'- uGC-CGGCU-UGGGCCGGGCG--------------UAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 23410 0.78 0.043524
Target:  5'- cGCGGCCuGGcGCUCGuGCCCGCGgUCGCCGg -3'
miRNA:   3'- -UGCCGG-CU-UGGGC-CGGGCGU-AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 4333 0.75 0.065666
Target:  5'- -aGGCUGcGCCCGGCCCGCuugcgaaugugGUUGCCc -3'
miRNA:   3'- ugCCGGCuUGGGCCGGGCG-----------UAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 21443 0.75 0.067112
Target:  5'- uACGGCUGGucaacuaACCCGGCCCcgcuggcGCAgcccgCGCCGg -3'
miRNA:   3'- -UGCCGGCU-------UGGGCCGGG-------CGUa----GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 52 0.74 0.077289
Target:  5'- cCGGCCGGucauCCCGGCUa-CGUCGCCa -3'
miRNA:   3'- uGCCGGCUu---GGGCCGGgcGUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 44343 0.74 0.081584
Target:  5'- -aGGCCGAucguccagaacACCgCGGCCUGCAU-GCCGa -3'
miRNA:   3'- ugCCGGCU-----------UGG-GCCGGGCGUAgCGGC- -5'
12791 5' -63.9 NC_003387.1 + 4490 0.74 0.088456
Target:  5'- -aGGCCGAGCCCgcggaGGcCCCGC-UCGaCCGg -3'
miRNA:   3'- ugCCGGCUUGGG-----CC-GGGCGuAGC-GGC- -5'
12791 5' -63.9 NC_003387.1 + 45254 0.74 0.090866
Target:  5'- cGCGGCuCGGugaucGCCUGGCCCaucGCGuucUCGCCGa -3'
miRNA:   3'- -UGCCG-GCU-----UGGGCCGGG---CGU---AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 42520 0.73 0.103882
Target:  5'- gGCGaCCGAucACgCGGCCCGCAUgaccgaCGCCGa -3'
miRNA:   3'- -UGCcGGCU--UGgGCCGGGCGUA------GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 11006 0.73 0.105839
Target:  5'- uCGGCCGugcCCCGGCcgccuucgucggcgCCGCGaCGCCGg -3'
miRNA:   3'- uGCCGGCuu-GGGCCG--------------GGCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 23250 0.73 0.106688
Target:  5'- -gGGCCGuGCCCuGCUCGCuggCGCCGu -3'
miRNA:   3'- ugCCGGCuUGGGcCGGGCGua-GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 42404 0.73 0.106973
Target:  5'- cGCGGCUGAuucccuugcccgcguCCUGGCCUGCG-CGCUGa -3'
miRNA:   3'- -UGCCGGCUu--------------GGGCCGGGCGUaGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.