miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 5' -63.9 NC_003387.1 + 52 0.74 0.077289
Target:  5'- cCGGCCGGucauCCCGGCUa-CGUCGCCa -3'
miRNA:   3'- uGCCGGCUu---GGGCCGGgcGUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 151 0.72 0.112515
Target:  5'- cGCGccGCCGAGCUgGGCCUGC-UgGCCGa -3'
miRNA:   3'- -UGC--CGGCUUGGgCCGGGCGuAgCGGC- -5'
12791 5' -63.9 NC_003387.1 + 186 0.72 0.118638
Target:  5'- gACGGUgcuCG-ACUCGGCCCGCGacaUUGCCGc -3'
miRNA:   3'- -UGCCG---GCuUGGGCCGGGCGU---AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 314 0.7 0.166555
Target:  5'- gUGGagcCCGAGCCCGGCgacaCGCA-CGCCa -3'
miRNA:   3'- uGCC---GGCUUGGGCCGg---GCGUaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 464 0.66 0.330466
Target:  5'- gGCGGCCGAcggcgaCCGGCgcgagCUGC-UCGUCGc -3'
miRNA:   3'- -UGCCGGCUug----GGCCG-----GGCGuAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 616 0.69 0.204098
Target:  5'- -aGGCCGAGCagGGCgagggcaGCGUCGCCGc -3'
miRNA:   3'- ugCCGGCUUGggCCGgg-----CGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1110 0.67 0.273977
Target:  5'- cGCGaGCgCGggUUCGGCCgugGguUCGCCGg -3'
miRNA:   3'- -UGC-CG-GCuuGGGCCGGg--CguAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1277 0.67 0.278595
Target:  5'- uGCGGCUGcgcggcguucGACCggcgcaguucgaggCGGCgCCGCAggcgcUCGCCGg -3'
miRNA:   3'- -UGCCGGC----------UUGG--------------GCCG-GGCGU-----AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1338 0.7 0.15415
Target:  5'- cCGGCCGAAUCCgaaaucGGCCUcgcuccacgGCAccUCGCCGu -3'
miRNA:   3'- uGCCGGCUUGGG------CCGGG---------CGU--AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1511 0.68 0.212967
Target:  5'- cGCGGCCGAcgugcaggcucagcACCuCGGUgCCGaggAUCGCCa -3'
miRNA:   3'- -UGCCGGCU--------------UGG-GCCG-GGCg--UAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 1823 0.66 0.315577
Target:  5'- cGCGGCCGAuauggcgaaggGCUgCGGCCUguuugagaacgGCGUcaaCGCCGa -3'
miRNA:   3'- -UGCCGGCU-----------UGG-GCCGGG-----------CGUA---GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 1952 0.66 0.315577
Target:  5'- cCGGCCgcGggUCUGGCCgGgCAgCGCCa -3'
miRNA:   3'- uGCCGG--CuuGGGCCGGgC-GUaGCGGc -5'
12791 5' -63.9 NC_003387.1 + 2003 0.68 0.242763
Target:  5'- gUGGCCGuGACgCUGGCCCuGCucggUGCCGc -3'
miRNA:   3'- uGCCGGC-UUG-GGCCGGG-CGua--GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 2267 0.71 0.150205
Target:  5'- -gGGCCGGGgUCGGCUCGaCGUCGUCc -3'
miRNA:   3'- ugCCGGCUUgGGCCGGGC-GUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 2463 0.66 0.294204
Target:  5'- -aGGCCGAggugcaccGCCCGGCgcugaCGUAcggCGCCu -3'
miRNA:   3'- ugCCGGCU--------UGGGCCGg----GCGUa--GCGGc -5'
12791 5' -63.9 NC_003387.1 + 2537 0.67 0.280593
Target:  5'- --uGCCGu-CCCGGUCgCGCAggaugaacUCGCCGg -3'
miRNA:   3'- ugcCGGCuuGGGCCGG-GCGU--------AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 2588 0.68 0.231131
Target:  5'- uCGGUCGAcGCCUGG-CCGCAguaCGCCc -3'
miRNA:   3'- uGCCGGCU-UGGGCCgGGCGUa--GCGGc -5'
12791 5' -63.9 NC_003387.1 + 3546 0.67 0.248155
Target:  5'- gACGGCCGccGCCUGcgcgaccGCCUGCG-CGCUGg -3'
miRNA:   3'- -UGCCGGCu-UGGGC-------CGGGCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 3617 0.67 0.273977
Target:  5'- cUGGCCGAGCUgagcgGGCgUGCGgguaUCGCCGu -3'
miRNA:   3'- uGCCGGCUUGGg----CCGgGCGU----AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 3745 0.69 0.194075
Target:  5'- gACGGCCGcauGCCC-GCgUGCAcgaUCGCCa -3'
miRNA:   3'- -UGCCGGCu--UGGGcCGgGCGU---AGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.