miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12791 5' -63.9 NC_003387.1 + 7824 0.85 0.012754
Target:  5'- gGCGGCCGAggucGCCCGGCgCGCAggcggaaUCGCCGa -3'
miRNA:   3'- -UGCCGGCU----UGGGCCGgGCGU-------AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 44880 0.72 0.121815
Target:  5'- cUGGCCGAgcugacgcagccGCCgGGCgcgcuauccguaUCGCGUCGCCGg -3'
miRNA:   3'- uGCCGGCU------------UGGgCCG------------GGCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 21802 0.72 0.12507
Target:  5'- gGCGGCC-AGCUCGGCgaGCGaCGCCGu -3'
miRNA:   3'- -UGCCGGcUUGGGCCGggCGUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 32847 0.66 0.330466
Target:  5'- -gGGCgGGGC--GGuUCCGCGUCGCCGa -3'
miRNA:   3'- ugCCGgCUUGggCC-GGGCGUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 21443 0.75 0.067112
Target:  5'- uACGGCUGGucaacuaACCCGGCCCcgcuggcGCAgcccgCGCCGg -3'
miRNA:   3'- -UGCCGGCU-------UGGGCCGGG-------CGUa----GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 52 0.74 0.077289
Target:  5'- cCGGCCGGucauCCCGGCUa-CGUCGCCa -3'
miRNA:   3'- uGCCGGCUu---GGGCCGGgcGUAGCGGc -5'
12791 5' -63.9 NC_003387.1 + 42520 0.73 0.103882
Target:  5'- gGCGaCCGAucACgCGGCCCGCAUgaccgaCGCCGa -3'
miRNA:   3'- -UGCcGGCU--UGgGCCGGGCGUA------GCGGC- -5'
12791 5' -63.9 NC_003387.1 + 32247 0.72 0.109565
Target:  5'- cUGGCCGAccGCCUGGCC---GUCGCCGa -3'
miRNA:   3'- uGCCGGCU--UGGGCCGGgcgUAGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 36718 0.72 0.112515
Target:  5'- cCGGUCGAgcuGCCCGGCCuCGa--CGCCGu -3'
miRNA:   3'- uGCCGGCU---UGGGCCGG-GCguaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 37250 0.72 0.121815
Target:  5'- gACGaGCUGAACgugUCGGCCCGCGUgGCgGu -3'
miRNA:   3'- -UGC-CGGCUUG---GGCCGGGCGUAgCGgC- -5'
12791 5' -63.9 NC_003387.1 + 42597 0.72 0.118638
Target:  5'- -aGGCCGAGCCCcGCCCGgugacccUCGCCc -3'
miRNA:   3'- ugCCGGCUUGGGcCGGGCgu-----AGCGGc -5'
12791 5' -63.9 NC_003387.1 + 28151 0.72 0.112515
Target:  5'- cACGaUCGAGCCCGGCCaGCucggcUCGCCGu -3'
miRNA:   3'- -UGCcGGCUUGGGCCGGgCGu----AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 50462 0.81 0.026435
Target:  5'- uCGaGCCGAcCCCGGCCCGCGaggUCGUCGg -3'
miRNA:   3'- uGC-CGGCUuGGGCCGGGCGU---AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 186 0.72 0.118638
Target:  5'- gACGGUgcuCG-ACUCGGCCCGCGacaUUGCCGc -3'
miRNA:   3'- -UGCCG---GCuUGGGCCGGGCGU---AGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 45579 0.79 0.032108
Target:  5'- cACGGCCGAggaGCCgGGCCuCGCGUgGCUGa -3'
miRNA:   3'- -UGCCGGCU---UGGgCCGG-GCGUAgCGGC- -5'
12791 5' -63.9 NC_003387.1 + 151 0.72 0.112515
Target:  5'- cGCGccGCCGAGCUgGGCCUGC-UgGCCGa -3'
miRNA:   3'- -UGC--CGGCUUGGgCCGGGCGuAgCGGC- -5'
12791 5' -63.9 NC_003387.1 + 7895 0.72 0.118638
Target:  5'- uCGGCCGcACUCGuGCCCGCG-CGCaCGu -3'
miRNA:   3'- uGCCGGCuUGGGC-CGGGCGUaGCG-GC- -5'
12791 5' -63.9 NC_003387.1 + 10374 0.72 0.12507
Target:  5'- -gGGCCGcAAgCUGGCCCGCAaccUCGgCGa -3'
miRNA:   3'- ugCCGGC-UUgGGCCGGGCGU---AGCgGC- -5'
12791 5' -63.9 NC_003387.1 + 40436 0.79 0.033938
Target:  5'- cCGGCCcGGCCCGGCCUGaCAgCGCCGa -3'
miRNA:   3'- uGCCGGcUUGGGCCGGGC-GUaGCGGC- -5'
12791 5' -63.9 NC_003387.1 + 4490 0.74 0.088456
Target:  5'- -aGGCCGAGCCCgcggaGGcCCCGC-UCGaCCGg -3'
miRNA:   3'- ugCCGGCUUGGG-----CC-GGGCGuAGC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.