miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12793 3' -54.5 NC_003387.1 + 52515 0.67 0.666751
Target:  5'- aCCGcGACaagaGCGACAagccgccgagcUGGCGGCCgggcgUCAc -3'
miRNA:   3'- -GGC-UUGg---CGCUGU-----------AUCGCCGGa----AGUa -5'
12793 3' -54.5 NC_003387.1 + 51061 0.72 0.403299
Target:  5'- aCCGGcccacACCuccuCGACGUGGCGGCCgUCGUc -3'
miRNA:   3'- -GGCU-----UGGc---GCUGUAUCGCCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 49800 0.71 0.44159
Target:  5'- gCCGAACCGCGACAcgaucAGCcGGUCgaagUUCAc -3'
miRNA:   3'- -GGCUUGGCGCUGUa----UCG-CCGG----AAGUa -5'
12793 3' -54.5 NC_003387.1 + 48796 0.74 0.301855
Target:  5'- gCUGAucGCCGCGGC--GGCGGCCaUCGUc -3'
miRNA:   3'- -GGCU--UGGCGCUGuaUCGCCGGaAGUA- -5'
12793 3' -54.5 NC_003387.1 + 46949 0.68 0.633461
Target:  5'- gUCGAuCCGCGGCGagcGCGGCCg---- -3'
miRNA:   3'- -GGCUuGGCGCUGUau-CGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 46296 0.66 0.753227
Target:  5'- gCCGAGCagGCGGCGcAGCgGGCCg---- -3'
miRNA:   3'- -GGCUUGg-CGCUGUaUCG-CCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 45879 0.67 0.655673
Target:  5'- gCGcGCCGCGGCcgAGCgGGCgaUCGa -3'
miRNA:   3'- gGCuUGGCGCUGuaUCG-CCGgaAGUa -5'
12793 3' -54.5 NC_003387.1 + 45718 0.66 0.763594
Target:  5'- gCCGAGCugcugCGCGACAUucuGCGGCg----- -3'
miRNA:   3'- -GGCUUG-----GCGCUGUAu--CGCCGgaagua -5'
12793 3' -54.5 NC_003387.1 + 42817 0.72 0.373337
Target:  5'- gCCGAGCCccgacggcggcgagGCGAuCAUGGCGGCgaUCGa -3'
miRNA:   3'- -GGCUUGG--------------CGCU-GUAUCGCCGgaAGUa -5'
12793 3' -54.5 NC_003387.1 + 41786 0.67 0.655673
Target:  5'- gCCGGgcgcguGCCGCGACcUGGCGcacGCCUggCAg -3'
miRNA:   3'- -GGCU------UGGCGCUGuAUCGC---CGGAa-GUa -5'
12793 3' -54.5 NC_003387.1 + 41680 1.08 0.001303
Target:  5'- gCCGAACCGCGACAUAGCGGCCUUCAUg -3'
miRNA:   3'- -GGCUUGGCGCUGUAUCGCCGGAAGUA- -5'
12793 3' -54.5 NC_003387.1 + 41217 0.66 0.718187
Target:  5'- cCCGAAuaagcacggcaacuCCGCGguGCAUGGCGGCgacaaggUCGUg -3'
miRNA:   3'- -GGCUU--------------GGCGC--UGUAUCGCCGga-----AGUA- -5'
12793 3' -54.5 NC_003387.1 + 41090 0.71 0.44159
Target:  5'- uUGAAUagccacugCGCGGCGgucGCGGCCUUCGUg -3'
miRNA:   3'- gGCUUG--------GCGCUGUau-CGCCGGAAGUA- -5'
12793 3' -54.5 NC_003387.1 + 40937 0.7 0.481857
Target:  5'- aCGAACaCGUG-CAcAGCGGCCUUgAUg -3'
miRNA:   3'- gGCUUG-GCGCuGUaUCGCCGGAAgUA- -5'
12793 3' -54.5 NC_003387.1 + 40873 0.7 0.492201
Target:  5'- cCCccGCCGCGAuCAUgucccaGGCGGCCUUgAUg -3'
miRNA:   3'- -GGcuUGGCGCU-GUA------UCGCCGGAAgUA- -5'
12793 3' -54.5 NC_003387.1 + 39079 0.67 0.666751
Target:  5'- aCCGAGCCGCcgccGAC--GGUGGCCg---- -3'
miRNA:   3'- -GGCUUGGCG----CUGuaUCGCCGGaagua -5'
12793 3' -54.5 NC_003387.1 + 39028 0.66 0.710619
Target:  5'- aCGAaacACCGUGG--UGGCGGCCggUCGa -3'
miRNA:   3'- gGCU---UGGCGCUguAUCGCCGGa-AGUa -5'
12793 3' -54.5 NC_003387.1 + 38838 0.66 0.721418
Target:  5'- gUCGAACCugcccgGCGGCAUugcguuGCGGaUCUUCAa -3'
miRNA:   3'- -GGCUUGG------CGCUGUAu-----CGCC-GGAAGUa -5'
12793 3' -54.5 NC_003387.1 + 38071 0.66 0.752183
Target:  5'- gCGAgcGCCGCGucacuguGCGcGGCGGCCUg--- -3'
miRNA:   3'- gGCU--UGGCGC-------UGUaUCGCCGGAagua -5'
12793 3' -54.5 NC_003387.1 + 36266 0.7 0.492201
Target:  5'- gCCGGGCUGUGGauUAUGGCGGCCc---- -3'
miRNA:   3'- -GGCUUGGCGCU--GUAUCGCCGGaagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.