Results 1 - 20 of 150 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 42023 | 0.66 | 0.511667 |
Target: 5'- ---cGCCCGGCUugauACcgGCGGCCAcCGCc -3' miRNA: 3'- acuaCGGGCUGG----UG--UGCCGGUaGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 20759 | 0.66 | 0.532346 |
Target: 5'- gUGAcGaCCGACCuuGCGGCCGgggaUGCGa -3' miRNA: 3'- -ACUaCgGGCUGGugUGCCGGUa---GCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 8881 | 0.66 | 0.532346 |
Target: 5'- cUGGUGCaccgccCCGACCu--CGGCC-UCGCc -3' miRNA: 3'- -ACUACG------GGCUGGuguGCCGGuAGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 51229 | 0.66 | 0.531304 |
Target: 5'- cUGGUGCacgCUGACC-UugGGCCAuaugcccaucgccUCGCGc -3' miRNA: 3'- -ACUACG---GGCUGGuGugCCGGU-------------AGCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 48434 | 0.66 | 0.521966 |
Target: 5'- cGGUGCgCUGcucGCC-CGCGGCCuccAUCGCc -3' miRNA: 3'- aCUACG-GGC---UGGuGUGCCGG---UAGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 42509 | 0.66 | 0.521966 |
Target: 5'- gGAUGCCCGACUcaagcuCGCGaGUC-UCGgGg -3' miRNA: 3'- aCUACGGGCUGGu-----GUGC-CGGuAGCgC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 750 | 0.66 | 0.521966 |
Target: 5'- gGAUGCggUCGGCCAcCGCGGCa---GCGa -3' miRNA: 3'- aCUACG--GGCUGGU-GUGCCGguagCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 47868 | 0.66 | 0.520933 |
Target: 5'- aGAacUGCUCGGCCGCcaucucgGCGuGCaCGUCGCc -3' miRNA: 3'- aCU--ACGGGCUGGUG-------UGC-CG-GUAGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 42293 | 0.66 | 0.511667 |
Target: 5'- cGAUGCCCG-CCGacagcCGCGaGCCGUacUGCu -3' miRNA: 3'- aCUACGGGCuGGU-----GUGC-CGGUA--GCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 46300 | 0.66 | 0.542798 |
Target: 5'- cGAcgGCCUGGCC-CGCaGUCAcCGCGg -3' miRNA: 3'- aCUa-CGGGCUGGuGUGcCGGUaGCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 11573 | 0.66 | 0.542798 |
Target: 5'- ---cGCCCuGACacuCGCAgCGGCCGUCgGCGc -3' miRNA: 3'- acuaCGGG-CUG---GUGU-GCCGGUAG-CGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 45380 | 0.66 | 0.542798 |
Target: 5'- cGGUGCgguaCGGCCGCA--GCCGUUGCu -3' miRNA: 3'- aCUACGg---GCUGGUGUgcCGGUAGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 43388 | 0.66 | 0.553317 |
Target: 5'- cUGGUGCUCGACgACgucgaccucgGgGGCCgugucaGUCGCGu -3' miRNA: 3'- -ACUACGGGCUGgUG----------UgCCGG------UAGCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 36783 | 0.66 | 0.553317 |
Target: 5'- aGgcGCgagUCGGCCGgGCGGCCuucucaccgauaAUCGCGg -3' miRNA: 3'- aCuaCG---GGCUGGUgUGCCGG------------UAGCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 31251 | 0.66 | 0.553317 |
Target: 5'- ---gGCCCGACCgGCGCGgGCUG-CGCc -3' miRNA: 3'- acuaCGGGCUGG-UGUGC-CGGUaGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 26190 | 0.66 | 0.553317 |
Target: 5'- -cGUGCuuG-CCugACGGCuCGUCGUc -3' miRNA: 3'- acUACGggCuGGugUGCCG-GUAGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 23479 | 0.66 | 0.553317 |
Target: 5'- --cUGCUCGACCuuguCGGCCGggaUCGUGc -3' miRNA: 3'- acuACGGGCUGGugu-GCCGGU---AGCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 39009 | 0.66 | 0.553317 |
Target: 5'- cUGAUcGCCCugcGCCGcCugGGCCG-CGCu -3' miRNA: 3'- -ACUA-CGGGc--UGGU-GugCCGGUaGCGc -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 37141 | 0.66 | 0.553317 |
Target: 5'- gUGuUGCCCGGCa--GCaGCCAggCGCGa -3' miRNA: 3'- -ACuACGGGCUGgugUGcCGGUa-GCGC- -5' |
|||||||
12796 | 5' | -58.6 | NC_003387.1 | + | 40335 | 0.66 | 0.553317 |
Target: 5'- uUGAUcGCCUgcagcagcggcaGAUUGCG-GGCCGUCGCGg -3' miRNA: 3'- -ACUA-CGGG------------CUGGUGUgCCGGUAGCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home