miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12798 3' -55 NC_003387.1 + 33717 0.65 0.74279
Target:  5'- cGAACAG-G-UUCGUCGAGGCCcacGCc -3'
miRNA:   3'- -CUUGUCgCuGGGCAGCUCCGGuuaCG- -5'
12798 3' -55 NC_003387.1 + 29349 0.65 0.74279
Target:  5'- --uCGGCGACCCGaaucagCucGGCCAucacuUGCu -3'
miRNA:   3'- cuuGUCGCUGGGCa-----GcuCCGGUu----ACG- -5'
12798 3' -55 NC_003387.1 + 11315 0.65 0.74279
Target:  5'- cGAACAGCGACUCGUgcugCGccucGGUCGcccgGCg -3'
miRNA:   3'- -CUUGUCGCUGGGCA----GCu---CCGGUua--CG- -5'
12798 3' -55 NC_003387.1 + 26690 0.65 0.74279
Target:  5'- -uGCAGCucgcgcuGCUCGUCGAcGCCGucGUGCg -3'
miRNA:   3'- cuUGUCGc------UGGGCAGCUcCGGU--UACG- -5'
12798 3' -55 NC_003387.1 + 240 0.65 0.741739
Target:  5'- cGGugAGCcGCCCcaauguuGUCGAGGgugUCAGUGCc -3'
miRNA:   3'- -CUugUCGcUGGG-------CAGCUCC---GGUUACG- -5'
12798 3' -55 NC_003387.1 + 2152 0.65 0.741739
Target:  5'- -cACcGCGGCCUGUUGAGGUgucaacaCAAaGCg -3'
miRNA:   3'- cuUGuCGCUGGGCAGCUCCG-------GUUaCG- -5'
12798 3' -55 NC_003387.1 + 21570 0.66 0.736467
Target:  5'- aGACcGUGGCCCaGgcgcgcggcaucagCGAGGCCGAcGCg -3'
miRNA:   3'- cUUGuCGCUGGG-Ca-------------GCUCCGGUUaCG- -5'
12798 3' -55 NC_003387.1 + 48533 0.66 0.732229
Target:  5'- -cGCGGUGGCCgaagcaccgCGcCGAGGUCAcGUGCc -3'
miRNA:   3'- cuUGUCGCUGG---------GCaGCUCCGGU-UACG- -5'
12798 3' -55 NC_003387.1 + 5135 0.66 0.732229
Target:  5'- cAGCGuGCGACCCGaucggUCGAGcuucaccgacacGCgAGUGCg -3'
miRNA:   3'- cUUGU-CGCUGGGC-----AGCUC------------CGgUUACG- -5'
12798 3' -55 NC_003387.1 + 41028 0.66 0.732229
Target:  5'- cGACAGCGAgCCCGaCGA--CCGcgGCg -3'
miRNA:   3'- cUUGUCGCU-GGGCaGCUccGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 37645 0.66 0.732229
Target:  5'- -cGCAGUGAaaCUCGUCGAGgagcuaGCCGcaugaGUGCa -3'
miRNA:   3'- cuUGUCGCU--GGGCAGCUC------CGGU-----UACG- -5'
12798 3' -55 NC_003387.1 + 25282 0.66 0.727976
Target:  5'- -uGCGcuCGACCCGUCGAucuucuacuggcaGCCAGUGUg -3'
miRNA:   3'- cuUGUc-GCUGGGCAGCUc------------CGGUUACG- -5'
12798 3' -55 NC_003387.1 + 36770 0.66 0.721567
Target:  5'- --uCAGCGACCgGcacUCGGcgcuGGCCGAcGCg -3'
miRNA:   3'- cuuGUCGCUGGgC---AGCU----CCGGUUaCG- -5'
12798 3' -55 NC_003387.1 + 52193 0.66 0.721567
Target:  5'- cGAGCAG-GACgCUGUCGAgcaGGCCGcugaGCa -3'
miRNA:   3'- -CUUGUCgCUG-GGCAGCU---CCGGUua--CG- -5'
12798 3' -55 NC_003387.1 + 29599 0.66 0.721567
Target:  5'- gGAGCcgGGCGACUaUGUCGGGuaucaGUCGGUGCa -3'
miRNA:   3'- -CUUG--UCGCUGG-GCAGCUC-----CGGUUACG- -5'
12798 3' -55 NC_003387.1 + 35673 0.66 0.721567
Target:  5'- cGGGCGGUGGCUgagcgggcacgUGUgGGGGCCGuacgGCg -3'
miRNA:   3'- -CUUGUCGCUGG-----------GCAgCUCCGGUua--CG- -5'
12798 3' -55 NC_003387.1 + 48217 0.66 0.721567
Target:  5'- -cGCAGCaGCCgGUCGAgcggGGCCuccGCg -3'
miRNA:   3'- cuUGUCGcUGGgCAGCU----CCGGuuaCG- -5'
12798 3' -55 NC_003387.1 + 17107 0.66 0.710816
Target:  5'- --uCGGCgGGCUCcUCGGGGCCGuagGCg -3'
miRNA:   3'- cuuGUCG-CUGGGcAGCUCCGGUua-CG- -5'
12798 3' -55 NC_003387.1 + 51026 0.66 0.710816
Target:  5'- --uCAGCGAUCCaGUCGAccGCCGccGCg -3'
miRNA:   3'- cuuGUCGCUGGG-CAGCUc-CGGUuaCG- -5'
12798 3' -55 NC_003387.1 + 4572 0.66 0.699986
Target:  5'- cGACaAGCuGCUCGcCGAGGCCGAcaaGCu -3'
miRNA:   3'- cUUG-UCGcUGGGCaGCUCCGGUUa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.