miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 52310 0.76 0.119891
Target:  5'- -aGCCACCGCCAGcacaGCCucgggGGUGCGa -3'
miRNA:   3'- ggCGGUGGCGGUCaaugCGG-----CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 51425 0.69 0.356927
Target:  5'- gCGgCGCCGCCucgaacUGCGCCGGU-CGa -3'
miRNA:   3'- gGCgGUGGCGGuca---AUGCGGCCAcGC- -5'
12800 5' -59.7 NC_003387.1 + 51355 0.68 0.408399
Target:  5'- gCGCCACUGCgAGcgguCGUCGGggucgGCGu -3'
miRNA:   3'- gGCGGUGGCGgUCaau-GCGGCCa----CGC- -5'
12800 5' -59.7 NC_003387.1 + 51304 0.68 0.382086
Target:  5'- aCGCaggAUCGCuCGGgccgACGuCCGGUGCGg -3'
miRNA:   3'- gGCGg--UGGCG-GUCaa--UGC-GGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 51296 0.66 0.493652
Target:  5'- -aGCC-CUGCCAGcu-CGUCGGcgGCGg -3'
miRNA:   3'- ggCGGuGGCGGUCaauGCGGCCa-CGC- -5'
12800 5' -59.7 NC_003387.1 + 51202 0.68 0.382086
Target:  5'- gUGCCACCGCCccg-ACuucacgaccgGCUGGUGCa -3'
miRNA:   3'- gGCGGUGGCGGucaaUG----------CGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 50970 0.69 0.354476
Target:  5'- gCGCCGCCGCCGGgcucAUGCUgucgaucagcaccgGGaUGCGc -3'
miRNA:   3'- gGCGGUGGCGGUCaa--UGCGG--------------CC-ACGC- -5'
12800 5' -59.7 NC_003387.1 + 50675 0.68 0.382086
Target:  5'- gCCGCCACCgcgGCCAGcucggcgACGgCGGccgucgGCGg -3'
miRNA:   3'- -GGCGGUGG---CGGUCaa-----UGCgGCCa-----CGC- -5'
12800 5' -59.7 NC_003387.1 + 50395 0.69 0.332954
Target:  5'- cUCGaCACCGCCgAGcugUACGUCGG-GCGg -3'
miRNA:   3'- -GGCgGUGGCGG-UCa--AUGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 50227 0.66 0.482774
Target:  5'- gCGUCACCGUCAcauacgaggcgccGUacgucaGCGCCGG-GCGg -3'
miRNA:   3'- gGCGGUGGCGGU-------------CAa-----UGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 50171 0.67 0.426558
Target:  5'- aCGCCACCgGCgAGUUcauccugcGCGaCCGGgacgGCa -3'
miRNA:   3'- gGCGGUGG-CGgUCAA--------UGC-GGCCa---CGc -5'
12800 5' -59.7 NC_003387.1 + 50072 0.69 0.348803
Target:  5'- gUCGUacaGCaCGCC----GCGCCGGUGCGg -3'
miRNA:   3'- -GGCGg--UG-GCGGucaaUGCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 48818 0.67 0.445188
Target:  5'- aUCGUC-CCGCCGGUcgUGCuGCuCGGcGCGa -3'
miRNA:   3'- -GGCGGuGGCGGUCA--AUG-CG-GCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 48731 0.66 0.513709
Target:  5'- gCCGCCACgGCCgccucaauccucGGgaACGUcacgcacgCGGUGCu -3'
miRNA:   3'- -GGCGGUGgCGG------------UCaaUGCG--------GCCACGc -5'
12800 5' -59.7 NC_003387.1 + 48418 0.74 0.156684
Target:  5'- -aGCCACUGCCGGgu-CGC-GGUGCGc -3'
miRNA:   3'- ggCGGUGGCGGUCaauGCGgCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 48376 0.75 0.133532
Target:  5'- -aGCCAgUCGCUuacGUUGCGCUGGUGCGc -3'
miRNA:   3'- ggCGGU-GGCGGu--CAAUGCGGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 46901 0.78 0.077342
Target:  5'- gCCGCC-CCGCCuugcgcggGGUUGCGCUucgguGGUGCGg -3'
miRNA:   3'- -GGCGGuGGCGG--------UCAAUGCGG-----CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 46813 0.7 0.295673
Target:  5'- cCCGCgCugCGUUAGcucGCuGCCGGUGCa -3'
miRNA:   3'- -GGCG-GugGCGGUCaa-UG-CGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 45425 0.67 0.435816
Target:  5'- aCgGCC-CCgGCgAGUUAcCGCCGG-GCGu -3'
miRNA:   3'- -GgCGGuGG-CGgUCAAU-GCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 45348 0.69 0.32523
Target:  5'- aCGCuCGCUGCCcaUUucgaccgcaaccAUGCCGGUGCGg -3'
miRNA:   3'- gGCG-GUGGCGGucAA------------UGCGGCCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.