miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12800 5' -59.7 NC_003387.1 + 26827 0.67 0.426558
Target:  5'- -aGCgCGCCGCCcuggACGCCGGggaGCa -3'
miRNA:   3'- ggCG-GUGGCGGucaaUGCGGCCa--CGc -5'
12800 5' -59.7 NC_003387.1 + 18673 0.67 0.454672
Target:  5'- gCGCUuagGCCGCCccacACGCCgaccaGGUGCGg -3'
miRNA:   3'- gGCGG---UGGCGGucaaUGCGG-----CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 29001 0.67 0.454672
Target:  5'- aUCGCCugCGCCgAGUcguuCGCCGccuggGCGu -3'
miRNA:   3'- -GGCGGugGCGG-UCAau--GCGGCca---CGC- -5'
12800 5' -59.7 NC_003387.1 + 35404 0.67 0.454672
Target:  5'- gCGCCACCGCaGGUca-GC-GGUGUGa -3'
miRNA:   3'- gGCGGUGGCGgUCAaugCGgCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 41503 0.67 0.445188
Target:  5'- gCCGUCGCCGUCGGcccACGCC--UGCa -3'
miRNA:   3'- -GGCGGUGGCGGUCaa-UGCGGccACGc -5'
12800 5' -59.7 NC_003387.1 + 45425 0.67 0.435816
Target:  5'- aCgGCC-CCgGCgAGUUAcCGCCGG-GCGu -3'
miRNA:   3'- -GgCGGuGG-CGgUCAAU-GCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 4484 0.67 0.435816
Target:  5'- gCCGCgGCCGaCCGGgcGCGacaCGaucGUGCGg -3'
miRNA:   3'- -GGCGgUGGC-GGUCaaUGCg--GC---CACGC- -5'
12800 5' -59.7 NC_003387.1 + 34499 0.67 0.426558
Target:  5'- cCCGCgGgCGaCCAGgu-CGCCGGUcgucGCGu -3'
miRNA:   3'- -GGCGgUgGC-GGUCaauGCGGCCA----CGC- -5'
12800 5' -59.7 NC_003387.1 + 14054 0.67 0.426558
Target:  5'- aCCGCCGUCGagguaCCAGUgcggauugaUGCGCCGGaacUGCa -3'
miRNA:   3'- -GGCGGUGGC-----GGUCA---------AUGCGGCC---ACGc -5'
12800 5' -59.7 NC_003387.1 + 9643 0.66 0.472987
Target:  5'- cCCGUCACCcugguguGCCAGcccucGgGgCGGUGCGg -3'
miRNA:   3'- -GGCGGUGG-------CGGUCaa---UgCgGCCACGC- -5'
12800 5' -59.7 NC_003387.1 + 5973 0.66 0.473961
Target:  5'- gUCGCUcgACCcgGCCGGUUGcCGCC-GUGCa -3'
miRNA:   3'- -GGCGG--UGG--CGGUCAAU-GCGGcCACGc -5'
12800 5' -59.7 NC_003387.1 + 50227 0.66 0.482774
Target:  5'- gCGUCACCGUCAcauacgaggcgccGUacgucaGCGCCGG-GCGg -3'
miRNA:   3'- gGCGGUGGCGGU-------------CAa-----UGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 38872 0.66 0.512698
Target:  5'- cUCGCCgGCCGUUAGcuagacGCGCCgaaccguggagcgGGUGCGg -3'
miRNA:   3'- -GGCGG-UGGCGGUCaa----UGCGG-------------CCACGC- -5'
12800 5' -59.7 NC_003387.1 + 34648 0.66 0.493652
Target:  5'- aCGUCaggaucggguGCCGCUGGgcaACGCCGGUGa- -3'
miRNA:   3'- gGCGG----------UGGCGGUCaa-UGCGGCCACgc -5'
12800 5' -59.7 NC_003387.1 + 34202 0.66 0.493652
Target:  5'- -aGCCACagCGCCAcGUcGCgGUCGGUGCc -3'
miRNA:   3'- ggCGGUG--GCGGU-CAaUG-CGGCCACGc -5'
12800 5' -59.7 NC_003387.1 + 23935 0.66 0.489683
Target:  5'- aCGCCGCggugUGCCAGUcccaugcUgcagcacgugcgcaGCGCCGG-GCGg -3'
miRNA:   3'- gGCGGUG----GCGGUCA-------A--------------UGCGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 2192 0.66 0.487705
Target:  5'- -aGCCACCGCgGgcucaggggugccucGUgcuCGCCGGUcagGCGg -3'
miRNA:   3'- ggCGGUGGCGgU---------------CAau-GCGGCCA---CGC- -5'
12800 5' -59.7 NC_003387.1 + 23428 0.66 0.483759
Target:  5'- cCCGCgGUCGCCGGggaacaggGCGUCGaUGCGg -3'
miRNA:   3'- -GGCGgUGGCGGUCaa------UGCGGCcACGC- -5'
12800 5' -59.7 NC_003387.1 + 18968 0.66 0.483759
Target:  5'- gCGgCGCCGCC-GUUGCccuuGCCGGgGUGc -3'
miRNA:   3'- gGCgGUGGCGGuCAAUG----CGGCCaCGC- -5'
12800 5' -59.7 NC_003387.1 + 9909 0.66 0.483759
Target:  5'- cUCGCCGCCGUCGGg---GCuCGGcUGCc -3'
miRNA:   3'- -GGCGGUGGCGGUCaaugCG-GCC-ACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.