miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12802 5' -55.6 NC_003387.1 + 52666 0.72 0.323793
Target:  5'- gCGCCGauCGAGCGCGuuuGUGCAGGUcaGCGAc -3'
miRNA:   3'- -GUGGC--GUUCGUGU---UACGUCCG--CGCUc -5'
12802 5' -55.6 NC_003387.1 + 52596 0.68 0.512173
Target:  5'- gAUCGCGAGgGCGAccgcaucgagGCGGGCGCGc- -3'
miRNA:   3'- gUGGCGUUCgUGUUa---------CGUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 52312 0.77 0.158406
Target:  5'- cCACCGCcAGCACAGccucGgGGGUGCGAGu -3'
miRNA:   3'- -GUGGCGuUCGUGUUa---CgUCCGCGCUC- -5'
12802 5' -55.6 NC_003387.1 + 52219 0.67 0.610611
Target:  5'- aACCGCGGuCGCcacGCGGGCGCGc- -3'
miRNA:   3'- gUGGCGUUcGUGuuaCGUCCGCGCuc -5'
12802 5' -55.6 NC_003387.1 + 51576 0.73 0.278293
Target:  5'- gCACCGCGcauGCAC---GCAGGCGcCGAGc -3'
miRNA:   3'- -GUGGCGUu--CGUGuuaCGUCCGC-GCUC- -5'
12802 5' -55.6 NC_003387.1 + 49402 0.69 0.450269
Target:  5'- gCugCGCAGGCG-GAUGCggagguGGGCGCGuGa -3'
miRNA:   3'- -GugGCGUUCGUgUUACG------UCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 49057 0.66 0.666357
Target:  5'- gCGCUGCuGGCGCucaccggGCAGGCucGCGGc -3'
miRNA:   3'- -GUGGCGuUCGUGuua----CGUCCG--CGCUc -5'
12802 5' -55.6 NC_003387.1 + 48156 0.67 0.57731
Target:  5'- cCACCGaggcccGCGCGGUcgcGCAGGCGCa-- -3'
miRNA:   3'- -GUGGCguu---CGUGUUA---CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 48023 0.66 0.644082
Target:  5'- gCGCCGUGgaucGGCAC-GUGCGGGCaCGGc -3'
miRNA:   3'- -GUGGCGU----UCGUGuUACGUCCGcGCUc -5'
12802 5' -55.6 NC_003387.1 + 47968 0.66 0.644082
Target:  5'- gCACCGCGAGCugGGcgGCAacggcaaacGGUGCuucGAGc -3'
miRNA:   3'- -GUGGCGUUCGugUUa-CGU---------CCGCG---CUC- -5'
12802 5' -55.6 NC_003387.1 + 47930 0.67 0.610611
Target:  5'- gGCgGCAGGCAUGggcacgacgccGUGUGGGcCGCGAa -3'
miRNA:   3'- gUGgCGUUCGUGU-----------UACGUCC-GCGCUc -5'
12802 5' -55.6 NC_003387.1 + 47390 0.72 0.308034
Target:  5'- aCACCGCAAGCGCGggGCAaccGGCcccgcccCGAGc -3'
miRNA:   3'- -GUGGCGUUCGUGUuaCGU---CCGc------GCUC- -5'
12802 5' -55.6 NC_003387.1 + 47307 0.67 0.610611
Target:  5'- aCGCCGCAGGCuGCAAcgcuUGC-GGCGUu-- -3'
miRNA:   3'- -GUGGCGUUCG-UGUU----ACGuCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 46955 0.75 0.218041
Target:  5'- cCGCgGCGAGCGCGgccgguuccgcuacAUGCGGGCGaCGAc -3'
miRNA:   3'- -GUGgCGUUCGUGU--------------UACGUCCGC-GCUc -5'
12802 5' -55.6 NC_003387.1 + 46707 0.67 0.599479
Target:  5'- uGCCGCuGGaCGCcaaGCAGGCggGCGAGu -3'
miRNA:   3'- gUGGCGuUC-GUGuuaCGUCCG--CGCUC- -5'
12802 5' -55.6 NC_003387.1 + 46608 0.66 0.655231
Target:  5'- aGCCGCugccGCGCAugucGCAGGUGUucGAGc -3'
miRNA:   3'- gUGGCGuu--CGUGUua--CGUCCGCG--CUC- -5'
12802 5' -55.6 NC_003387.1 + 46599 0.69 0.491114
Target:  5'- -gUCGCcAGCACcg-GCAGGUGCGuGg -3'
miRNA:   3'- guGGCGuUCGUGuuaCGUCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 46364 0.67 0.610611
Target:  5'- gGCCGaggcCAAGCGCGAcacgGUGGGCGCa-- -3'
miRNA:   3'- gUGGC----GUUCGUGUUa---CGUCCGCGcuc -5'
12802 5' -55.6 NC_003387.1 + 45221 0.68 0.522841
Target:  5'- gGCCGCAgacucgucacccAGCG-GGUGCGGGUGCGcGg -3'
miRNA:   3'- gUGGCGU------------UCGUgUUACGUCCGCGCuC- -5'
12802 5' -55.6 NC_003387.1 + 45116 0.67 0.57731
Target:  5'- aCGCCGCGGuGUACGAgGUgacgcauuucgAGGCGCGGc -3'
miRNA:   3'- -GUGGCGUU-CGUGUUaCG-----------UCCGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.