miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12804 5' -55.6 NC_003387.1 + 24854 0.66 0.774852
Target:  5'- uCCUGCUCGAcCGCG-CCggugUCGAuCGugGc -3'
miRNA:   3'- -GGGUGAGCUaGCGCaGG----AGCU-GCugC- -5'
12804 5' -55.6 NC_003387.1 + 4563 0.66 0.774852
Target:  5'- gCCUGCgCGAccgCGCGggCCUCGGUGGCGc -3'
miRNA:   3'- -GGGUGaGCUa--GCGCa-GGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 3497 0.66 0.774852
Target:  5'- gCCGCUCGG-C-CG-CCUCGAcCGGCa -3'
miRNA:   3'- gGGUGAGCUaGcGCaGGAGCU-GCUGc -5'
12804 5' -55.6 NC_003387.1 + 51542 0.66 0.774852
Target:  5'- aCCAUgUCGuccAUCGCGUUCUCGGUGAgGa -3'
miRNA:   3'- gGGUG-AGC---UAGCGCAGGAGCUGCUgC- -5'
12804 5' -55.6 NC_003387.1 + 36716 0.66 0.774852
Target:  5'- aCCCGgUCGAgcugCcCGgCCUCGACGcCGu -3'
miRNA:   3'- -GGGUgAGCUa---GcGCaGGAGCUGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 22972 0.66 0.764986
Target:  5'- cCCCGgUC-AUCGUGUCgggcggcgcCGACGACGg -3'
miRNA:   3'- -GGGUgAGcUAGCGCAGga-------GCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 32187 0.66 0.764986
Target:  5'- aCCGC-CGAgcugCGCGUCgUCacCGACGa -3'
miRNA:   3'- gGGUGaGCUa---GCGCAGgAGcuGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 14373 0.66 0.75499
Target:  5'- gCUugUCGAggGCcUCgUCGACGACc -3'
miRNA:   3'- gGGugAGCUagCGcAGgAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 33848 0.66 0.75499
Target:  5'- --aGCUCGAugaugcUCGCGacgagcgCCUCGgGCGACGa -3'
miRNA:   3'- gggUGAGCU------AGCGCa------GGAGC-UGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 43792 0.66 0.75499
Target:  5'- aCCgGCgUCGccCGCuUCCUCGACGAg- -3'
miRNA:   3'- -GGgUG-AGCuaGCGcAGGAGCUGCUgc -5'
12804 5' -55.6 NC_003387.1 + 46772 0.66 0.75499
Target:  5'- uCCCGCcgaGGUCG-GUCCUCG-CG-CGg -3'
miRNA:   3'- -GGGUGag-CUAGCgCAGGAGCuGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 40874 0.66 0.75499
Target:  5'- cCCCGCcgCGAUCaugucccagGCGgCCUUGAUGaACGg -3'
miRNA:   3'- -GGGUGa-GCUAG---------CGCaGGAGCUGC-UGC- -5'
12804 5' -55.6 NC_003387.1 + 33100 0.66 0.744874
Target:  5'- gCCGCcCG-UCGCGcCCUUcGCGGCGu -3'
miRNA:   3'- gGGUGaGCuAGCGCaGGAGcUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 10782 0.66 0.744874
Target:  5'- gCCUGCaUCG-UCGgGUCgUCGGCGuCGg -3'
miRNA:   3'- -GGGUG-AGCuAGCgCAGgAGCUGCuGC- -5'
12804 5' -55.6 NC_003387.1 + 818 0.66 0.744874
Target:  5'- gCCAgCUCGGgcagcaccUCGaCGagcUUCUCGGCGACGg -3'
miRNA:   3'- gGGU-GAGCU--------AGC-GC---AGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 51236 0.66 0.744874
Target:  5'- gCCUgguGCUCGAcgUCGaCGcccuggcCCUCGACGACc -3'
miRNA:   3'- -GGG---UGAGCU--AGC-GCa------GGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 17229 0.66 0.740797
Target:  5'- aCCGCUCGAcgagcgcacgccgUgGCGugucgaaacgucgaUCCaguUCGACGACGa -3'
miRNA:   3'- gGGUGAGCU-------------AgCGC--------------AGG---AGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 43301 0.66 0.73465
Target:  5'- gCCCGCgUCGuacUCGuCGgcccacUCCUCGGCGAUc -3'
miRNA:   3'- -GGGUG-AGCu--AGC-GC------AGGAGCUGCUGc -5'
12804 5' -55.6 NC_003387.1 + 2072 0.66 0.73465
Target:  5'- gUCUGCgCGA-CGCgGUCCUCGGCGGUGa -3'
miRNA:   3'- -GGGUGaGCUaGCG-CAGGAGCUGCUGC- -5'
12804 5' -55.6 NC_003387.1 + 21915 0.66 0.73465
Target:  5'- gCCGCUUcAUCGacauugugGUgCUCGGCGGCGg -3'
miRNA:   3'- gGGUGAGcUAGCg-------CAgGAGCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.