miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12805 5' -58 NC_003387.1 + 50918 0.68 0.453836
Target:  5'- gCCGCGCCggucagcuucaccUUGaCCUUG-CGGgcuuucagcUCGGGCg -3'
miRNA:   3'- -GGUGCGG-------------AACgGGAACaGCC---------AGCCCG- -5'
12805 5' -58 NC_003387.1 + 48151 0.67 0.504328
Target:  5'- gCGCGCCaccgagGCCCgcg-CGGUCGcgcaGGCg -3'
miRNA:   3'- gGUGCGGaa----CGGGaacaGCCAGC----CCG- -5'
12805 5' -58 NC_003387.1 + 48083 0.69 0.426377
Target:  5'- gCCGgGCCUUGUCCUUaUCGGcCuuGGCc -3'
miRNA:   3'- -GGUgCGGAACGGGAAcAGCCaGc-CCG- -5'
12805 5' -58 NC_003387.1 + 47420 0.68 0.474308
Target:  5'- uCCACGCUcacccGCCCa----GGUUGGGCg -3'
miRNA:   3'- -GGUGCGGaa---CGGGaacagCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 46904 0.67 0.524789
Target:  5'- gCCcCGCCUUGCgCgggGUugcgcuucggUGGUgCGGGCg -3'
miRNA:   3'- -GGuGCGGAACGgGaa-CA----------GCCA-GCCCG- -5'
12805 5' -58 NC_003387.1 + 45653 0.67 0.52479
Target:  5'- gC-CGCCUgGCgCCgaaggUGUcCGGUCaGGGCg -3'
miRNA:   3'- gGuGCGGAaCG-GGa----ACA-GCCAG-CCCG- -5'
12805 5' -58 NC_003387.1 + 45547 0.67 0.535139
Target:  5'- aCC-CGCUUgaucgGCCCcgguguuggUGUCGGgacCGGGUa -3'
miRNA:   3'- -GGuGCGGAa----CGGGa--------ACAGCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 45276 0.76 0.154732
Target:  5'- gCCACGCCga-CCCc-GUCGGgCGGGCa -3'
miRNA:   3'- -GGUGCGGaacGGGaaCAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 44427 0.66 0.556043
Target:  5'- gCCGCGCCggUGaUCCacacGUCGcccUCGGGCg -3'
miRNA:   3'- -GGUGCGGa-AC-GGGaa--CAGCc--AGCCCG- -5'
12805 5' -58 NC_003387.1 + 44386 0.67 0.545559
Target:  5'- gCACGUCgggGUCgUcgagGUCGGcCGGGCc -3'
miRNA:   3'- gGUGCGGaa-CGGgAa---CAGCCaGCCCG- -5'
12805 5' -58 NC_003387.1 + 43235 0.66 0.556044
Target:  5'- aCCACGUgUUGCCgUuccUGuUCGGcgcCGGGUc -3'
miRNA:   3'- -GGUGCGgAACGGgA---AC-AGCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 42760 0.68 0.474308
Target:  5'- gCUGCGCUggUGCCC----CGaGUCGGGCa -3'
miRNA:   3'- -GGUGCGGa-ACGGGaacaGC-CAGCCCG- -5'
12805 5' -58 NC_003387.1 + 42427 0.66 0.566585
Target:  5'- uCCugGCCUgcgcgcugagcGCCCgaggUGUCGaacuUCGGGg -3'
miRNA:   3'- -GGugCGGAa----------CGGGa---ACAGCc---AGCCCg -5'
12805 5' -58 NC_003387.1 + 39468 0.67 0.549745
Target:  5'- ---gGCCUUGCCCUuggugcgcagaucgcUGUCGGccugcUCGGcGUc -3'
miRNA:   3'- ggugCGGAACGGGA---------------ACAGCC-----AGCC-CG- -5'
12805 5' -58 NC_003387.1 + 39403 0.71 0.324064
Target:  5'- -aACGUCUUGCCCagGUCGcugccGUCGaGGCc -3'
miRNA:   3'- ggUGCGGAACGGGaaCAGC-----CAGC-CCG- -5'
12805 5' -58 NC_003387.1 + 39205 0.7 0.356042
Target:  5'- aCCAgGCC---CCCg---CGGUCGGGCa -3'
miRNA:   3'- -GGUgCGGaacGGGaacaGCCAGCCCG- -5'
12805 5' -58 NC_003387.1 + 39154 0.66 0.577178
Target:  5'- uCCGCGCCgaggGCg--UGUacUGGUCGGuGCg -3'
miRNA:   3'- -GGUGCGGaa--CGggaACA--GCCAGCC-CG- -5'
12805 5' -58 NC_003387.1 + 39153 0.69 0.390174
Target:  5'- gCCgACGUCcUGCCC--GUCGaUCGGGCu -3'
miRNA:   3'- -GG-UGCGGaACGGGaaCAGCcAGCCCG- -5'
12805 5' -58 NC_003387.1 + 38891 0.66 0.598485
Target:  5'- aCGCGCCgaa-CCgUGgagCGGgugCGGGCg -3'
miRNA:   3'- gGUGCGGaacgGGaACa--GCCa--GCCCG- -5'
12805 5' -58 NC_003387.1 + 38716 0.67 0.524789
Target:  5'- gUACGCCggguUGCCCUgccagucauUCGGauacUUGGGCg -3'
miRNA:   3'- gGUGCGGa---ACGGGAac-------AGCC----AGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.