miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12807 5' -59 NC_003387.1 + 18519 0.66 0.520084
Target:  5'- ---cGGGCcGCCGCGGUGGcaCGCaGGc -3'
miRNA:   3'- cauaCUCGaCGGCGUCGCCcaGCG-CC- -5'
12807 5' -59 NC_003387.1 + 48741 0.66 0.509792
Target:  5'- ---cGAGUccaUGaCCGC-GCGGGUCGCc- -3'
miRNA:   3'- cauaCUCG---AC-GGCGuCGCCCAGCGcc -5'
12807 5' -59 NC_003387.1 + 25982 0.66 0.509792
Target:  5'- ---gGGGUaUGCCGCucGCcgGGGUCGCGa -3'
miRNA:   3'- cauaCUCG-ACGGCGu-CG--CCCAGCGCc -5'
12807 5' -59 NC_003387.1 + 44885 0.66 0.509792
Target:  5'- ---cGAGCUGaCGCAGCcgccGGG-CGCGc -3'
miRNA:   3'- cauaCUCGACgGCGUCG----CCCaGCGCc -5'
12807 5' -59 NC_003387.1 + 10919 0.66 0.499587
Target:  5'- -gAUGAuCUGCCagGCGuGCGccaGGUCGCGGc -3'
miRNA:   3'- caUACUcGACGG--CGU-CGC---CCAGCGCC- -5'
12807 5' -59 NC_003387.1 + 31300 0.66 0.489473
Target:  5'- ---cGuAGCUGCUGCGcCGGGcCGcCGGg -3'
miRNA:   3'- cauaC-UCGACGGCGUcGCCCaGC-GCC- -5'
12807 5' -59 NC_003387.1 + 22443 0.66 0.479455
Target:  5'- ----aGGCgcggGCCGCGGCGuuGGccUCGCGGu -3'
miRNA:   3'- cauacUCGa---CGGCGUCGC--CC--AGCGCC- -5'
12807 5' -59 NC_003387.1 + 2051 0.66 0.469539
Target:  5'- ---cGAGCUgGCCGCGGUGGcGgCGCc- -3'
miRNA:   3'- cauaCUCGA-CGGCGUCGCC-CaGCGcc -5'
12807 5' -59 NC_003387.1 + 4474 0.67 0.459729
Target:  5'- ---cGAGCUgcugGCCGCGGCcgaccGGG-CGCGa -3'
miRNA:   3'- cauaCUCGA----CGGCGUCG-----CCCaGCGCc -5'
12807 5' -59 NC_003387.1 + 33048 0.67 0.459729
Target:  5'- ---aGGGCaccgUGCCGCAcCGGGUgCGCGc -3'
miRNA:   3'- cauaCUCG----ACGGCGUcGCCCA-GCGCc -5'
12807 5' -59 NC_003387.1 + 4532 0.67 0.450029
Target:  5'- -----cGCcGCCGguGCGGGcaccUUGCGGg -3'
miRNA:   3'- cauacuCGaCGGCguCGCCC----AGCGCC- -5'
12807 5' -59 NC_003387.1 + 30870 0.67 0.440443
Target:  5'- -cGUGAacuGUUGCgGUAGCGGGgccaUCGcCGGg -3'
miRNA:   3'- caUACU---CGACGgCGUCGCCC----AGC-GCC- -5'
12807 5' -59 NC_003387.1 + 20213 0.67 0.440443
Target:  5'- ---cGGGCgUGCaCGCAGCGGcagucGUCGCa- -3'
miRNA:   3'- cauaCUCG-ACG-GCGUCGCC-----CAGCGcc -5'
12807 5' -59 NC_003387.1 + 26942 0.67 0.430974
Target:  5'- ---cGAGCgGCCGagaaugucgAGCGGGUUGCcGGu -3'
miRNA:   3'- cauaCUCGaCGGCg--------UCGCCCAGCG-CC- -5'
12807 5' -59 NC_003387.1 + 7386 0.67 0.421625
Target:  5'- --cUGAGCUgcacggaucgGCCGCGGcCGGGUCuuGCuGGc -3'
miRNA:   3'- cauACUCGA----------CGGCGUC-GCCCAG--CG-CC- -5'
12807 5' -59 NC_003387.1 + 23849 0.67 0.421625
Target:  5'- ----aAGCcGCCGCAGuCGGGgcCGUGGa -3'
miRNA:   3'- cauacUCGaCGGCGUC-GCCCa-GCGCC- -5'
12807 5' -59 NC_003387.1 + 44635 0.67 0.4124
Target:  5'- ---cGGGCggguuggcGCCgaccgGCAGCGGGUuagCGCGGg -3'
miRNA:   3'- cauaCUCGa-------CGG-----CGUCGCCCA---GCGCC- -5'
12807 5' -59 NC_003387.1 + 7063 0.67 0.4124
Target:  5'- ---cGGGC-GCUGCGGCGGGaUCugacggaaGCGGa -3'
miRNA:   3'- cauaCUCGaCGGCGUCGCCC-AG--------CGCC- -5'
12807 5' -59 NC_003387.1 + 35958 0.68 0.4033
Target:  5'- ---aGuGCUGCgCGguGCGGGUaauugaggcgaGCGGa -3'
miRNA:   3'- cauaCuCGACG-GCguCGCCCAg----------CGCC- -5'
12807 5' -59 NC_003387.1 + 48245 0.68 0.4033
Target:  5'- ---cGGGCUcgGCCuucGCGGCGGGcUCgGCGGu -3'
miRNA:   3'- cauaCUCGA--CGG---CGUCGCCC-AG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.