miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12808 5' -51.9 NC_003387.1 + 40138 0.66 0.909202
Target:  5'- cCGACGGguGAUCGGGGuaagcGUCcUG-CGACCg -3'
miRNA:   3'- -GCUGCU--UUGGCUCC-----UAGaACgGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 39602 0.66 0.909202
Target:  5'- -aGCGAGGCCGAcgaguGGAUC--GCCGAg- -3'
miRNA:   3'- gcUGCUUUGGCU-----CCUAGaaCGGCUgg -5'
12808 5' -51.9 NC_003387.1 + 19445 0.66 0.909202
Target:  5'- uCGuCGGugUCGGGGAUCggcgGCaGGCCg -3'
miRNA:   3'- -GCuGCUuuGGCUCCUAGaa--CGgCUGG- -5'
12808 5' -51.9 NC_003387.1 + 36665 0.66 0.902477
Target:  5'- cCGACGAccUCGcGGAUCaUGUCGucGCCa -3'
miRNA:   3'- -GCUGCUuuGGCuCCUAGaACGGC--UGG- -5'
12808 5' -51.9 NC_003387.1 + 32544 0.66 0.902477
Target:  5'- aCGGCGgcGCCGuccGGuggCgaGCCGACg -3'
miRNA:   3'- -GCUGCuuUGGCu--CCua-GaaCGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 18350 0.66 0.902477
Target:  5'- cCGuuGucGCCGuuGGGUU-UGCCGACCu -3'
miRNA:   3'- -GCugCuuUGGCu-CCUAGaACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 14488 0.66 0.902477
Target:  5'- uCGGCGAGGCCacuaaGGGcgCgcUGUCGAUCg -3'
miRNA:   3'- -GCUGCUUUGGc----UCCuaGa-ACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 14820 0.66 0.90179
Target:  5'- cCGACGGcgcgcacgaucacGACCGAGaaaGAUCcgGUCGACg -3'
miRNA:   3'- -GCUGCU-------------UUGGCUC---CUAGaaCGGCUGg -5'
12808 5' -51.9 NC_003387.1 + 48314 0.66 0.895478
Target:  5'- uCGACGAAAUCGAGGcggc-GCgCGAgCg -3'
miRNA:   3'- -GCUGCUUUGGCUCCuagaaCG-GCUgG- -5'
12808 5' -51.9 NC_003387.1 + 70 0.66 0.895478
Target:  5'- uCGAuCGgcGCCGcGGGcgUUUGCUGGCUc -3'
miRNA:   3'- -GCU-GCuuUGGC-UCCuaGAACGGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 1948 0.66 0.895478
Target:  5'- uGAUccGGCCGcGGGUCUgGCCGGgCa -3'
miRNA:   3'- gCUGcuUUGGCuCCUAGAaCGGCUgG- -5'
12808 5' -51.9 NC_003387.1 + 34638 0.66 0.895478
Target:  5'- uCGACGAuguaCGucAGGAUCgggUGCCGcugggcaacGCCg -3'
miRNA:   3'- -GCUGCUuug-GC--UCCUAGa--ACGGC---------UGG- -5'
12808 5' -51.9 NC_003387.1 + 21564 0.66 0.895478
Target:  5'- cCGAgGcAACCGAGcuGAUCcUGCaCGACUc -3'
miRNA:   3'- -GCUgCuUUGGCUC--CUAGaACG-GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 42215 0.66 0.895478
Target:  5'- uCGcCG-AGCCGAGcgccccgcuGAUCUUGCUG-CCa -3'
miRNA:   3'- -GCuGCuUUGGCUC---------CUAGAACGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 26800 0.66 0.895478
Target:  5'- uCGACGAGGCCGcgcuGGuGGUCggugagcgcGCCGcCCu -3'
miRNA:   3'- -GCUGCUUUGGC----UC-CUAGaa-------CGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 11275 0.66 0.888206
Target:  5'- uCGGCGAcucGAUCaAGGcUCUUG-CGACCg -3'
miRNA:   3'- -GCUGCU---UUGGcUCCuAGAACgGCUGG- -5'
12808 5' -51.9 NC_003387.1 + 395 0.66 0.888206
Target:  5'- gCGACGGAACCGAucGcGUCgcgcugUGUugCGACCu -3'
miRNA:   3'- -GCUGCUUUGGCU--CcUAGa-----ACG--GCUGG- -5'
12808 5' -51.9 NC_003387.1 + 51835 0.66 0.888206
Target:  5'- -cACGAGcgcGCCGAGcagguacGUCUUGCCGgucuGCCg -3'
miRNA:   3'- gcUGCUU---UGGCUCc------UAGAACGGC----UGG- -5'
12808 5' -51.9 NC_003387.1 + 34765 0.66 0.888206
Target:  5'- cCGACGAccacACCG-GGGUCUgcCCGuCCu -3'
miRNA:   3'- -GCUGCUu---UGGCuCCUAGAacGGCuGG- -5'
12808 5' -51.9 NC_003387.1 + 45839 0.66 0.888206
Target:  5'- gCGACGAcGCCGcGGaGAUCcUGCgCGAgCu -3'
miRNA:   3'- -GCUGCUuUGGC-UC-CUAGaACG-GCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.