miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 46040 0.66 0.540698
Target:  5'- cCGCGagcugucggcaaucaCCUCGAUcgccGCGUCGGCGucCCa -3'
miRNA:   3'- -GCGCg--------------GGAGCUGu---CGCAGCUGCucGG- -5'
12810 5' -59.5 NC_003387.1 + 10860 0.66 0.489215
Target:  5'- cCGUGCCCgcucaucaCGACcGcCGUCGGCcgcuGGCCg -3'
miRNA:   3'- -GCGCGGGa-------GCUGuC-GCAGCUGc---UCGG- -5'
12810 5' -59.5 NC_003387.1 + 47154 0.66 0.489215
Target:  5'- -uUGCCagCUCGGCGGCGUCagccuUGAGCUg -3'
miRNA:   3'- gcGCGG--GAGCUGUCGCAGcu---GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 20082 0.66 0.489215
Target:  5'- aGCGUuauguCCUUGAggcucauaggguCAGCGcccccgCGGCGAGCCc -3'
miRNA:   3'- gCGCG-----GGAGCU------------GUCGCa-----GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 19394 0.66 0.489215
Target:  5'- --aGCaCgUUGuGCAGCGUCGuGCGGGCCu -3'
miRNA:   3'- gcgCG-GgAGC-UGUCGCAGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12192 0.66 0.489215
Target:  5'- -aCGCCCUCgGGCAG-GUCGcugcucggugcCGGGCCa -3'
miRNA:   3'- gcGCGGGAG-CUGUCgCAGCu----------GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 48465 0.66 0.488228
Target:  5'- cCGCGaaaUCUCuuGCGGCGUagugaggccgucgCGGCGGGCCu -3'
miRNA:   3'- -GCGCg--GGAGc-UGUCGCA-------------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 23117 0.66 0.488228
Target:  5'- gGCGCCCggcgCGACccucaccggcaacGGUGucaUCGACGucacGCCg -3'
miRNA:   3'- gCGCGGGa---GCUG-------------UCGC---AGCUGCu---CGG- -5'
12810 5' -59.5 NC_003387.1 + 15152 0.66 0.488228
Target:  5'- cCGCGUacaccuaCCUCGACGcGCGccgcgaggugaUCGACGAggagGCCc -3'
miRNA:   3'- -GCGCG-------GGAGCUGU-CGC-----------AGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 16739 0.66 0.499139
Target:  5'- uCGUGCCCUCGucguCGcCGcCGA-GGGCCu -3'
miRNA:   3'- -GCGCGGGAGCu---GUcGCaGCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 23269 0.66 0.499139
Target:  5'- gGCGCCguuCUCGAUcgcgaggauAGCGacCGcGCGGGCCg -3'
miRNA:   3'- gCGCGG---GAGCUG---------UCGCa-GC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 35543 0.66 0.499139
Target:  5'- uCGCGCCgUCGccgcccagGCGGCGcaccagcucagCG-CGGGCCg -3'
miRNA:   3'- -GCGCGGgAGC--------UGUCGCa----------GCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 29878 0.66 0.529423
Target:  5'- uGCGCCUUgcgcgcCGAUcGCGUUGGCGAucGCg -3'
miRNA:   3'- gCGCGGGA------GCUGuCGCAGCUGCU--CGg -5'
12810 5' -59.5 NC_003387.1 + 48046 0.66 0.519249
Target:  5'- --aGCaCCUCGucuugcuugGCGGCGUCGGCcgcuuggcgccGGGCCu -3'
miRNA:   3'- gcgCG-GGAGC---------UGUCGCAGCUG-----------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 32534 0.66 0.519249
Target:  5'- uGCGUaguUCaCGGCGGCGccguccggUGGCGAGCCg -3'
miRNA:   3'- gCGCG---GGaGCUGUCGCa-------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 24636 0.66 0.513181
Target:  5'- uGcCGCCCUggucgauagguucgaCGcGCAGCGaguacgaGGCGAGCCa -3'
miRNA:   3'- gC-GCGGGA---------------GC-UGUCGCag-----CUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 10694 0.66 0.509152
Target:  5'- gGCGCCCU----GGCGcUCGGCGAccaucacgGCCa -3'
miRNA:   3'- gCGCGGGAgcugUCGC-AGCUGCU--------CGG- -5'
12810 5' -59.5 NC_003387.1 + 2081 0.66 0.509152
Target:  5'- aCGCgGUCCUCGGCGGUGaaguUCGACauuguaGGCUc -3'
miRNA:   3'- -GCG-CGGGAGCUGUCGC----AGCUGc-----UCGG- -5'
12810 5' -59.5 NC_003387.1 + 14220 0.66 0.508147
Target:  5'- uGcCGCCCUCGcacgcccACGGCcgcUCGGgauCGGGCCg -3'
miRNA:   3'- gC-GCGGGAGC-------UGUCGc--AGCU---GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 34797 0.66 0.506139
Target:  5'- gGCGCCUugguguugucguagUCGGgGGCGUCGAgaauguucguCGAcgGCCc -3'
miRNA:   3'- gCGCGGG--------------AGCUgUCGCAGCU----------GCU--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.