miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 135 0.66 0.489215
Target:  5'- gGuCGCCCUCGcgauCcGCGcCGcCGAGCUg -3'
miRNA:   3'- gC-GCGGGAGCu---GuCGCaGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 279 0.66 0.519249
Target:  5'- cCGCGCCggUCGAguGCacgaucaCGAcCGAGCCg -3'
miRNA:   3'- -GCGCGGg-AGCUguCGca-----GCU-GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 459 0.68 0.387044
Target:  5'- cCGCGCgCUCG--GGCG-CGGCGuuGCCg -3'
miRNA:   3'- -GCGCGgGAGCugUCGCaGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 711 0.71 0.278991
Target:  5'- uGCGCCgCaaGGCAucGUGUCGACG-GCCu -3'
miRNA:   3'- gCGCGG-GagCUGU--CGCAGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 747 0.67 0.469651
Target:  5'- gGUGCgCgCGACguguGGCG-CGAUGGGCCu -3'
miRNA:   3'- gCGCGgGaGCUG----UCGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 827 0.68 0.387044
Target:  5'- gGCaGCaCCUCGACgAGCuucUCGGCGAcgGCCu -3'
miRNA:   3'- gCG-CG-GGAGCUG-UCGc--AGCUGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 1166 0.72 0.2231
Target:  5'- gGUGCUUagCGGCAGCGguagCGGCGGGCg -3'
miRNA:   3'- gCGCGGGa-GCUGUCGCa---GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 1300 0.69 0.329768
Target:  5'- uCGaCGCCCU-GGCGGgcgaCGUCGACGAcGUCg -3'
miRNA:   3'- -GC-GCGGGAgCUGUC----GCAGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 1456 0.68 0.378471
Target:  5'- uCGuCGUCCUCGucgaGGuCGUCGA-GGGCCa -3'
miRNA:   3'- -GC-GCGGGAGCug--UC-GCAGCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 1577 0.66 0.528402
Target:  5'- aGCGCCUaacgcccuggcggUCGACA-UGUCGcACG-GCCu -3'
miRNA:   3'- gCGCGGG-------------AGCUGUcGCAGC-UGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 1596 0.67 0.469651
Target:  5'- aCGCGCCCuggcauguUCGGCcgGGCGcgUGugGgcAGCCu -3'
miRNA:   3'- -GCGCGGG--------AGCUG--UCGCa-GCugC--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 2027 0.7 0.322114
Target:  5'- gGUGCCgC-CGACGGCcgccGUCGcCGAGCUg -3'
miRNA:   3'- gCGCGG-GaGCUGUCG----CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 2081 0.66 0.509152
Target:  5'- aCGCgGUCCUCGGCGGUGaaguUCGACauuguaGGCUc -3'
miRNA:   3'- -GCG-CGGGAGCUGUCGC----AGCUGc-----UCGG- -5'
12810 5' -59.5 NC_003387.1 + 2271 0.67 0.479384
Target:  5'- gGCGCCCcgaggugccCGAgGGCGccagCGACGaAGUCa -3'
miRNA:   3'- gCGCGGGa--------GCUgUCGCa---GCUGC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 2320 0.7 0.292834
Target:  5'- uGcCGCCCgacguacagcUCGGCGGUGUCGA--GGCCg -3'
miRNA:   3'- gC-GCGGG----------AGCUGUCGCAGCUgcUCGG- -5'
12810 5' -59.5 NC_003387.1 + 2710 0.68 0.404569
Target:  5'- uGUGCUCggCGAC-GCGggCGGCGGGCa -3'
miRNA:   3'- gCGCGGGa-GCUGuCGCa-GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 3162 0.68 0.404569
Target:  5'- gGCGCaCCUCGGCgaGGCcguaaUCGGggUGAGCCu -3'
miRNA:   3'- gCGCG-GGAGCUG--UCGc----AGCU--GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 3422 0.83 0.038115
Target:  5'- cCGUGCCCUCGGCGuGC-UCGGCGAGCa -3'
miRNA:   3'- -GCGCGGGAGCUGU-CGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 3676 0.67 0.479384
Target:  5'- aGCGCCa---GCAGCGcaacCGuCGAGCCg -3'
miRNA:   3'- gCGCGGgagcUGUCGCa---GCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 4363 0.71 0.24667
Target:  5'- -uUGCCCUUGGC-GCGcUCGGCG-GCCa -3'
miRNA:   3'- gcGCGGGAGCUGuCGC-AGCUGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.