miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 37105 0.85 0.027135
Target:  5'- gCGCGCCCUCGACGugcucGaCGUCGGCcGGGCCg -3'
miRNA:   3'- -GCGCGGGAGCUGU-----C-GCAGCUG-CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 8194 0.71 0.272267
Target:  5'- gCGCGUuuUCGACAGCGaCGuCGuGCg -3'
miRNA:   3'- -GCGCGggAGCUGUCGCaGCuGCuCGg -5'
12810 5' -59.5 NC_003387.1 + 12272 0.71 0.272267
Target:  5'- cCGCGCCUggCGAcCGGCGgccggaUCaGCGGGCCg -3'
miRNA:   3'- -GCGCGGGa-GCU-GUCGC------AGcUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 13886 0.66 0.53967
Target:  5'- -aUGCCUugagcugCGGCGGC-UCGuCGAGCCa -3'
miRNA:   3'- gcGCGGGa------GCUGUCGcAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 8680 0.8 0.068091
Target:  5'- uGCGCCgUUCGGCAcgccgcugccgaccGaCGUCGACGAGCCg -3'
miRNA:   3'- gCGCGG-GAGCUGU--------------C-GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 35979 0.78 0.083334
Target:  5'- --gGCCCUCGGCGGCGaCGACGAGg- -3'
miRNA:   3'- gcgCGGGAGCUGUCGCaGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 10011 0.75 0.139599
Target:  5'- cCGCGgCCgggCGACGaCGaCGACGAGCCg -3'
miRNA:   3'- -GCGCgGGa--GCUGUcGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 43708 0.74 0.155243
Target:  5'- gGCGCCCgccaggugcUCGACGGCGgcaugCGG-GAGCCc -3'
miRNA:   3'- gCGCGGG---------AGCUGUCGCa----GCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 37293 0.73 0.190863
Target:  5'- gCGCGCUCgucggcgcggucgUCGACcGCGcCGACGuGCCg -3'
miRNA:   3'- -GCGCGGG-------------AGCUGuCGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 36339 0.71 0.24667
Target:  5'- gGuCGUCgUCGACuGCGaaaCGACGGGCCu -3'
miRNA:   3'- gC-GCGGgAGCUGuCGCa--GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 30065 0.72 0.212049
Target:  5'- gCGCGCCCU-GACGGcCGcCGggGCGAGCa -3'
miRNA:   3'- -GCGCGGGAgCUGUC-GCaGC--UGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 48070 0.73 0.18169
Target:  5'- cCGCGCCC-CGA-AGCGccUCGACGGGUg -3'
miRNA:   3'- -GCGCGGGaGCUgUCGC--AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 41276 0.83 0.038115
Target:  5'- uGCGCCCccUCGACGGCGacgagcgaaaccUCGACGAGCg -3'
miRNA:   3'- gCGCGGG--AGCUGUCGC------------AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 49181 0.72 0.234637
Target:  5'- uCGCGCaggCGGCGGcCGUCGACguugcuGAGCCc -3'
miRNA:   3'- -GCGCGggaGCUGUC-GCAGCUG------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12899 0.8 0.064947
Target:  5'- aGCGgCCUCGACGGCGUgGGgGuGCCu -3'
miRNA:   3'- gCGCgGGAGCUGUCGCAgCUgCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 40998 0.74 0.172458
Target:  5'- gGUGCCUgau-CGGCGUCGACG-GCCg -3'
miRNA:   3'- gCGCGGGagcuGUCGCAGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 29852 0.71 0.24667
Target:  5'- gGCGCCCcugucgauucgUCGGCGagggcgcuuucGUGUUGACGGGUCa -3'
miRNA:   3'- gCGCGGG-----------AGCUGU-----------CGCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 37855 0.71 0.272267
Target:  5'- uGCGCCCggCGGCucGCcUCGACGAuGCUu -3'
miRNA:   3'- gCGCGGGa-GCUGu-CGcAGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 40743 0.8 0.064947
Target:  5'- gCGCGCCCUCGACaaGGCGggCGuCGAGUa -3'
miRNA:   3'- -GCGCGGGAGCUG--UCGCa-GCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 49495 0.76 0.112571
Target:  5'- uGCGCCCgcc-CGGCGUCGACGuGUCg -3'
miRNA:   3'- gCGCGGGagcuGUCGCAGCUGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.