miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 33567 1.12 0.000275
Target:  5'- cCGCGCCCUCGACAGCGUCGACGAGCCa -3'
miRNA:   3'- -GCGCGGGAGCUGUCGCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 26015 0.89 0.014088
Target:  5'- uCGCGCCgCgcaCGACGGCGUCGACGAGCa -3'
miRNA:   3'- -GCGCGG-Ga--GCUGUCGCAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 37105 0.85 0.027135
Target:  5'- gCGCGCCCUCGACGugcucGaCGUCGGCcGGGCCg -3'
miRNA:   3'- -GCGCGGGAGCUGU-----C-GCAGCUG-CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 41276 0.83 0.038115
Target:  5'- uGCGCCCccUCGACGGCGacgagcgaaaccUCGACGAGCg -3'
miRNA:   3'- gCGCGGG--AGCUGUCGC------------AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 3422 0.83 0.038115
Target:  5'- cCGUGCCCUCGGCGuGC-UCGGCGAGCa -3'
miRNA:   3'- -GCGCGGGAGCUGU-CGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 40743 0.8 0.064947
Target:  5'- gCGCGCCCUCGACaaGGCGggCGuCGAGUa -3'
miRNA:   3'- -GCGCGGGAGCUG--UCGCa-GCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 12899 0.8 0.064947
Target:  5'- aGCGgCCUCGACGGCGUgGGgGuGCCu -3'
miRNA:   3'- gCGCgGGAGCUGUCGCAgCUgCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 8680 0.8 0.068091
Target:  5'- uGCGCCgUUCGGCAcgccgcugccgaccGaCGUCGACGAGCCg -3'
miRNA:   3'- gCGCGG-GAGCUGU--------------C-GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 27993 0.79 0.074617
Target:  5'- gGCGCCCUCGAuuuCGGCGagcacgcgcUUGGCGAGCUu -3'
miRNA:   3'- gCGCGGGAGCU---GUCGC---------AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 35979 0.78 0.083334
Target:  5'- --gGCCCUCGGCGGCGaCGACGAGg- -3'
miRNA:   3'- gcgCGGGAGCUGUCGCaGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 31421 0.78 0.088048
Target:  5'- aCGCGCCacugCUCGACGGCcUCGACGAcgacgcggugcGCCa -3'
miRNA:   3'- -GCGCGG----GAGCUGUCGcAGCUGCU-----------CGG- -5'
12810 5' -59.5 NC_003387.1 + 7606 0.77 0.106622
Target:  5'- uGCGUcaCCUCGuacaccGCGGCGUCGACGAccugGCCg -3'
miRNA:   3'- gCGCG--GGAGC------UGUCGCAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 11651 0.77 0.106622
Target:  5'- uCGC-CCCUCGAUcGCGUCGACagcGGCCu -3'
miRNA:   3'- -GCGcGGGAGCUGuCGCAGCUGc--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 6881 0.77 0.109559
Target:  5'- uCGCGCaggauCUCcGCGGCGUCGucGCGGGCCa -3'
miRNA:   3'- -GCGCGg----GAGcUGUCGCAGC--UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 35675 0.76 0.112267
Target:  5'- uCGCGUCCUCGACgacgcccGGCGagGGCGgcAGCCg -3'
miRNA:   3'- -GCGCGGGAGCUG-------UCGCagCUGC--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 49495 0.76 0.112571
Target:  5'- uGCGCCCgcc-CGGCGUCGACGuGUCg -3'
miRNA:   3'- gCGCGGGagcuGUCGCAGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 15989 0.76 0.112571
Target:  5'- gGCGCUCgcaGACGGCGUCGAggcCGGGCa -3'
miRNA:   3'- gCGCGGGag-CUGUCGCAGCU---GCUCGg -5'
12810 5' -59.5 NC_003387.1 + 42687 0.76 0.11883
Target:  5'- cCGCGCCCUCGGCGcGCuUCGGCucGUCg -3'
miRNA:   3'- -GCGCGGGAGCUGU-CGcAGCUGcuCGG- -5'
12810 5' -59.5 NC_003387.1 + 44867 0.75 0.13233
Target:  5'- cCGUaGCCgUCGGgGGCGUCGGCGAuuccGCCu -3'
miRNA:   3'- -GCG-CGGgAGCUgUCGCAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 33108 0.75 0.13592
Target:  5'- uCGCGCCCUUcGCGGCGUCaaggaACGAcuGCCa -3'
miRNA:   3'- -GCGCGGGAGcUGUCGCAGc----UGCU--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.