miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12817 3' -57.4 NC_003387.1 + 31048 0.66 0.532648
Target:  5'- ---cCAGGGCguCGGCGAaCAcGUGCUCg -3'
miRNA:   3'- aauaGUCCCG--GUCGCUcGUaCGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 48939 0.66 0.532648
Target:  5'- ---gCGGGuuGCUGGCGGGCggGCuGCUCg -3'
miRNA:   3'- aauaGUCC--CGGUCGCUCGuaCG-CGAG- -5'
12817 3' -57.4 NC_003387.1 + 14641 0.66 0.531565
Target:  5'- -cGUCAGGccgccgcGCaCAGUGAcGCG-GCGCUCg -3'
miRNA:   3'- aaUAGUCC-------CG-GUCGCU-CGUaCGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 48883 0.66 0.518634
Target:  5'- gUGUUugcuGGGCCAccgcgaaaucgccuGCGAGC-UGCGCg- -3'
miRNA:   3'- aAUAGu---CCCGGU--------------CGCUCGuACGCGag -5'
12817 3' -57.4 NC_003387.1 + 3606 0.66 0.512215
Target:  5'- --uUCAGGGCguccuggccgagcugAGCGGGCGUGCGgguaUCg -3'
miRNA:   3'- aauAGUCCCGg--------------UCGCUCGUACGCg---AG- -5'
12817 3' -57.4 NC_003387.1 + 21299 0.66 0.511149
Target:  5'- -cGUCGaGGCCGuCGAGCAgugGCGCg- -3'
miRNA:   3'- aaUAGUcCCGGUcGCUCGUa--CGCGag -5'
12817 3' -57.4 NC_003387.1 + 25261 0.66 0.500534
Target:  5'- cUAUCc-GGCCGaCGucgcGCGUGCGCUCg -3'
miRNA:   3'- aAUAGucCCGGUcGCu---CGUACGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 2983 0.66 0.500534
Target:  5'- --cUCGGGGCCucGCGAGgc-GCuGCUCg -3'
miRNA:   3'- aauAGUCCCGGu-CGCUCguaCG-CGAG- -5'
12817 3' -57.4 NC_003387.1 + 8407 0.66 0.500534
Target:  5'- gUGUCGGGGCCucGCcGGUgcGCGCg- -3'
miRNA:   3'- aAUAGUCCCGGu-CGcUCGuaCGCGag -5'
12817 3' -57.4 NC_003387.1 + 42739 0.66 0.490018
Target:  5'- -cGUCAGGGCguGCucggaucGGC-UGCGCUg -3'
miRNA:   3'- aaUAGUCCCGguCGc------UCGuACGCGAg -5'
12817 3' -57.4 NC_003387.1 + 120 0.66 0.490018
Target:  5'- -gGUCAGGGCguGUuugcuGAGCu--CGCUCg -3'
miRNA:   3'- aaUAGUCCCGguCG-----CUCGuacGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 35452 0.66 0.480643
Target:  5'- cUGUCGGGGUCGucgucgaacuggaucGaCGuuucgacacgccacGGCGUGCGCUCg -3'
miRNA:   3'- aAUAGUCCCGGU---------------C-GC--------------UCGUACGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 1379 0.66 0.479607
Target:  5'- -cGUCGGcGCuCAGCGGGUcgggGUcGCGCUCg -3'
miRNA:   3'- aaUAGUCcCG-GUCGCUCG----UA-CGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 44615 0.67 0.469304
Target:  5'- -cGUC-GGGCCGuggcGCGAGCGUGUGg-- -3'
miRNA:   3'- aaUAGuCCCGGU----CGCUCGUACGCgag -5'
12817 3' -57.4 NC_003387.1 + 18499 0.67 0.469304
Target:  5'- ----gAGGGCCuGC-AGCAUGCuCUCg -3'
miRNA:   3'- aauagUCCCGGuCGcUCGUACGcGAG- -5'
12817 3' -57.4 NC_003387.1 + 16481 0.67 0.459117
Target:  5'- ---gCAGGG-CAGCGGGUcgGCGUa- -3'
miRNA:   3'- aauaGUCCCgGUCGCUCGuaCGCGag -5'
12817 3' -57.4 NC_003387.1 + 41959 0.67 0.459117
Target:  5'- ---gCAGGccGCCAGCGAGgAgcUGCGCg- -3'
miRNA:   3'- aauaGUCC--CGGUCGCUCgU--ACGCGag -5'
12817 3' -57.4 NC_003387.1 + 42463 0.67 0.449048
Target:  5'- --uUCGGGGCgAccuUGAGCccGCGCUCg -3'
miRNA:   3'- aauAGUCCCGgUc--GCUCGuaCGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 26772 0.67 0.449048
Target:  5'- -----cGGGUUAGCGAGCA-GCGC-Ca -3'
miRNA:   3'- aauaguCCCGGUCGCUCGUaCGCGaG- -5'
12817 3' -57.4 NC_003387.1 + 16204 0.67 0.437128
Target:  5'- cUGUCGGGGCuCAGCcuGCGcugccauaugccGCGCUCg -3'
miRNA:   3'- aAUAGUCCCG-GUCGcuCGUa-----------CGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.