miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12820 3' -62.4 NC_003387.1 + 9729 0.66 0.364914
Target:  5'- -cGCGUACGgGuCGGCGUCaaGGUCGGc- -3'
miRNA:   3'- cuCGCGUGCgC-GCUGCAG--CCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 21471 0.66 0.364914
Target:  5'- uGGCGCAgccCGCGCcg-GUCGGgCCGGGc -3'
miRNA:   3'- cUCGCGU---GCGCGcugCAGCC-GGCCUa -5'
12820 3' -62.4 NC_003387.1 + 34077 0.66 0.364914
Target:  5'- gGAGCGCAgGCggauucgcaaaGgGGCGUCGGCauGAc -3'
miRNA:   3'- -CUCGCGUgCG-----------CgCUGCAGCCGgcCUa -5'
12820 3' -62.4 NC_003387.1 + 19331 0.66 0.364914
Target:  5'- cAGCGaCGaGCGCGGCGagaaccUGGCCGGGc -3'
miRNA:   3'- cUCGC-GUgCGCGCUGCa-----GCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 25202 0.66 0.364914
Target:  5'- cAG-GCAaccuCGCGGCGgCGGCCGGAUc -3'
miRNA:   3'- cUCgCGUgc--GCGCUGCaGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 1941 0.66 0.364086
Target:  5'- cAGCGCAUGauccggcCGCGG-GUCuGGCCGGGc -3'
miRNA:   3'- cUCGCGUGC-------GCGCUgCAG-CCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 50438 0.66 0.35669
Target:  5'- cGGCGUACGCcagcgaggaCGACGUCGaGCCGa-- -3'
miRNA:   3'- cUCGCGUGCGc--------GCUGCAGC-CGGCcua -5'
12820 3' -62.4 NC_003387.1 + 52387 0.66 0.35669
Target:  5'- -cGCGCACGCGgaucuUGGCGUgCGugucGCCGGGc -3'
miRNA:   3'- cuCGCGUGCGC-----GCUGCA-GC----CGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 48195 0.66 0.35669
Target:  5'- aGGUGCcCGCaccgGCGGCGgCGGCCGaGGUg -3'
miRNA:   3'- cUCGCGuGCG----CGCUGCaGCCGGC-CUA- -5'
12820 3' -62.4 NC_003387.1 + 23656 0.66 0.351819
Target:  5'- cAGCGC-CGCgacgcaguuuaugacGCGGCucaaggCGGCCGGAUa -3'
miRNA:   3'- cUCGCGuGCG---------------CGCUGca----GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 38091 0.66 0.348597
Target:  5'- cGGCcuuGCccuuCGCGUacACGUCGGCCGGGUu -3'
miRNA:   3'- cUCG---CGu---GCGCGc-UGCAGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 1294 0.66 0.348597
Target:  5'- -uGCGCcucgacgcccugGCGgGCGACGUCGacgacGUCGGGUa -3'
miRNA:   3'- cuCGCG------------UGCgCGCUGCAGC-----CGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 3627 0.66 0.347795
Target:  5'- uGAGCGgGCGUGCGGguaucgcCGUCGaCCGGc- -3'
miRNA:   3'- -CUCGCgUGCGCGCU-------GCAGCcGGCCua -5'
12820 3' -62.4 NC_003387.1 + 32230 0.66 0.340637
Target:  5'- -uGCGCGaGCGCGACGagcUGGCCGa-- -3'
miRNA:   3'- cuCGCGUgCGCGCUGCa--GCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 48600 0.66 0.340637
Target:  5'- uGAaCGCA-GCGCGGUGUCGGCCGa-- -3'
miRNA:   3'- -CUcGCGUgCGCGCUGCAGCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 31259 0.66 0.340637
Target:  5'- cGGCGCGgGCuGCGccaGCGg-GGCCGGGUu -3'
miRNA:   3'- cUCGCGUgCG-CGC---UGCagCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 817 0.66 0.340637
Target:  5'- -uGCGCgaaGCGCGACGaCGGCCu--- -3'
miRNA:   3'- cuCGCGug-CGCGCUGCaGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 12273 0.66 0.332808
Target:  5'- -cGCGCcUG-GCGACcggCGGCCGGAUc -3'
miRNA:   3'- cuCGCGuGCgCGCUGca-GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 32526 0.66 0.332808
Target:  5'- cGAGCGCAUGCguaguucacgGCGGCGcCGuCCGGu- -3'
miRNA:   3'- -CUCGCGUGCG----------CGCUGCaGCcGGCCua -5'
12820 3' -62.4 NC_003387.1 + 4978 0.66 0.31755
Target:  5'- -cGUGCuCGCGCaGAgGUCGGUCGcGAUu -3'
miRNA:   3'- cuCGCGuGCGCG-CUgCAGCCGGC-CUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.