Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12833 | 3' | -55.2 | NC_003387.1 | + | 24014 | 0.66 | 0.735875 |
Target: 5'- cCCCGUCGA-GCGAGAuuGCGuuucaCCCgUCGCu -3' miRNA: 3'- uGGGCAGUUgUGCUUU--CGC-----GGG-AGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 39163 | 0.66 | 0.714647 |
Target: 5'- uGCCCGUCGAU-CG--GGCuGCCCagGCc -3' miRNA: 3'- -UGGGCAGUUGuGCuuUCG-CGGGagCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 4650 | 0.66 | 0.714647 |
Target: 5'- cACCCGUCGAgGCGcuucGGGGCGCgguaGCg -3' miRNA: 3'- -UGGGCAGUUgUGC----UUUCGCGggagCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 43806 | 0.66 | 0.703905 |
Target: 5'- gGCCucggaCGUgAGCACGu---UGCCCUCGCc -3' miRNA: 3'- -UGG-----GCAgUUGUGCuuucGCGGGAGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 19875 | 0.66 | 0.703905 |
Target: 5'- -gUCGgCGACGCGGAAcCGCCC-CGCc -3' miRNA: 3'- ugGGCaGUUGUGCUUUcGCGGGaGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 32845 | 0.66 | 0.703905 |
Target: 5'- gGCCC---AGCACGGugucuugcaGGGCGCCCagCGCc -3' miRNA: 3'- -UGGGcagUUGUGCU---------UUCGCGGGa-GCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 28174 | 0.66 | 0.703905 |
Target: 5'- aACCCGgCGACAguuuCGcucGGC-CCCUCGCc -3' miRNA: 3'- -UGGGCaGUUGU----GCuu-UCGcGGGAGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 21805 | 0.66 | 0.703905 |
Target: 5'- gGCCCGgugCAGCcCGAcgggagcuggGAGCGCaagCGCa -3' miRNA: 3'- -UGGGCa--GUUGuGCU----------UUCGCGggaGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 14801 | 0.66 | 0.703905 |
Target: 5'- uGCCCGgCGgugccgagccACGCGGgcagcGGGuCGCCCUCGg -3' miRNA: 3'- -UGGGCaGU----------UGUGCU-----UUC-GCGGGAGCg -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 9015 | 0.66 | 0.714647 |
Target: 5'- -gCCGUCGAgcacCugGcgGGCGCCgUCGg -3' miRNA: 3'- ugGGCAGUU----GugCuuUCGCGGgAGCg -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 45759 | 0.66 | 0.714647 |
Target: 5'- cGCCC-UCGACgaggGCGGccagcaGGGUGCCCUcaCGCa -3' miRNA: 3'- -UGGGcAGUUG----UGCU------UUCGCGGGA--GCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 46970 | 0.66 | 0.714647 |
Target: 5'- aGCUCGUCGGC-CGAGgcguucAGCucGUCCUCGg -3' miRNA: 3'- -UGGGCAGUUGuGCUU------UCG--CGGGAGCg -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 7565 | 0.66 | 0.735875 |
Target: 5'- uGCCUGcUC-ACGCGAccaccuccGAGCGCCg-CGCc -3' miRNA: 3'- -UGGGC-AGuUGUGCU--------UUCGCGGgaGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 14912 | 0.66 | 0.729547 |
Target: 5'- gGCCCGaucgcgcgcugcugCGAcCGCGGGugcuGCGCCCaggCGCg -3' miRNA: 3'- -UGGGCa-------------GUU-GUGCUUu---CGCGGGa--GCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 50538 | 0.66 | 0.725308 |
Target: 5'- cGCCacauGUCGGCgACcAAGGCGCCgagcugCUCGCg -3' miRNA: 3'- -UGGg---CAGUUG-UGcUUUCGCGG------GAGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 2355 | 0.66 | 0.725308 |
Target: 5'- -gCCGUCGGCGuCGA--GCGCCaCguaCGCg -3' miRNA: 3'- ugGGCAGUUGU-GCUuuCGCGG-Ga--GCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 47576 | 0.66 | 0.725308 |
Target: 5'- uGCaCCGacCGGCGCc-GAGCGCCCcucgUCGCg -3' miRNA: 3'- -UG-GGCa-GUUGUGcuUUCGCGGG----AGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 11592 | 0.66 | 0.725308 |
Target: 5'- -gCCGUCGGCGCGcugccacuuGAuccggucgugcAGCGCCagcagCUCGCg -3' miRNA: 3'- ugGGCAGUUGUGC---------UU-----------UCGCGG-----GAGCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 9389 | 0.66 | 0.725308 |
Target: 5'- gGCCCGcgAGCAgGAAAuUGCCCggCGCu -3' miRNA: 3'- -UGGGCagUUGUgCUUUcGCGGGa-GCG- -5' |
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12833 | 3' | -55.2 | NC_003387.1 | + | 31110 | 0.66 | 0.725308 |
Target: 5'- uGCCCGaUCAuguGCACcAGcAGCGCcgcgucggCCUCGCu -3' miRNA: 3'- -UGGGC-AGU---UGUGcUU-UCGCG--------GGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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