miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12833 3' -55.2 NC_003387.1 + 120 0.79 0.143179
Target:  5'- cGCCCGccUCGAUGCGGu--CGCCCUCGCg -3'
miRNA:   3'- -UGGGC--AGUUGUGCUuucGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 26122 0.71 0.418842
Target:  5'- cGCCagGUCGGCGCGuccGuCGCCgCUCGCg -3'
miRNA:   3'- -UGGg-CAGUUGUGCuuuC-GCGG-GAGCG- -5'
12833 3' -55.2 NC_003387.1 + 35544 0.7 0.454606
Target:  5'- gGCCCGcCAggaGCACGAcgccGcgauggacuaccucGGCGCCCUgGCc -3'
miRNA:   3'- -UGGGCaGU---UGUGCU----U--------------UCGCGGGAgCG- -5'
12833 3' -55.2 NC_003387.1 + 24014 0.66 0.735875
Target:  5'- cCCCGUCGA-GCGAGAuuGCGuuucaCCCgUCGCu -3'
miRNA:   3'- uGGGCAGUUgUGCUUU--CGC-----GGG-AGCG- -5'
12833 3' -55.2 NC_003387.1 + 37267 0.75 0.238741
Target:  5'- gGCCCG-CGugGCGGucaAGGCGCCUggCGCg -3'
miRNA:   3'- -UGGGCaGUugUGCU---UUCGCGGGa-GCG- -5'
12833 3' -55.2 NC_003387.1 + 37370 0.75 0.245019
Target:  5'- cACCUGUCGG-GCGgcGGCGCCC-CGCu -3'
miRNA:   3'- -UGGGCAGUUgUGCuuUCGCGGGaGCG- -5'
12833 3' -55.2 NC_003387.1 + 44437 0.74 0.271513
Target:  5'- uGCCCGcCGACGCGcacGAGGCGCUg-CGCg -3'
miRNA:   3'- -UGGGCaGUUGUGC---UUUCGCGGgaGCG- -5'
12833 3' -55.2 NC_003387.1 + 35812 0.74 0.285601
Target:  5'- gGCgCCGUCGGCGCGA---UGCUCUCGUa -3'
miRNA:   3'- -UG-GGCAGUUGUGCUuucGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 40154 0.72 0.364645
Target:  5'- gACaCCGUCGGCGgccCGAucGUcgucgaGCCCUCGCa -3'
miRNA:   3'- -UG-GGCAGUUGU---GCUuuCG------CGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 51305 0.71 0.409472
Target:  5'- aGCUCGUCG--GCGgcGGCGC-CUCGCa -3'
miRNA:   3'- -UGGGCAGUugUGCuuUCGCGgGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 22639 0.72 0.391132
Target:  5'- cGCCCGcCGACGacuGAGCGCaugCUCGCu -3'
miRNA:   3'- -UGGGCaGUUGUgcuUUCGCGg--GAGCG- -5'
12833 3' -55.2 NC_003387.1 + 13648 0.73 0.346856
Target:  5'- -aCCGUCGGCGgcggcucggucgcCGAGGGCGCCgUCGa -3'
miRNA:   3'- ugGGCAGUUGU-------------GCUUUCGCGGgAGCg -5'
12833 3' -55.2 NC_003387.1 + 45569 0.77 0.173468
Target:  5'- aGCUCGUCGGCACGGccgagGAGCcgGgCCUCGCg -3'
miRNA:   3'- -UGGGCAGUUGUGCU-----UUCG--CgGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 4314 0.71 0.400235
Target:  5'- gACCCGgcaguggcUCAACGCcgaGAAGGCGCaCCagCGCa -3'
miRNA:   3'- -UGGGC--------AGUUGUG---CUUUCGCG-GGa-GCG- -5'
12833 3' -55.2 NC_003387.1 + 29857 0.77 0.178236
Target:  5'- cCCUGUCGAUucgucgGCGAGGGCGCUUUCGUg -3'
miRNA:   3'- uGGGCAGUUG------UGCUUUCGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 19153 0.74 0.292859
Target:  5'- gGCUCGUCGACGCugucGAGGGCGCggCC-CGCa -3'
miRNA:   3'- -UGGGCAGUUGUG----CUUUCGCG--GGaGCG- -5'
12833 3' -55.2 NC_003387.1 + 37296 0.71 0.400235
Target:  5'- cGCUCGUCGGCGCGGucgucgaccGCGCCgaCGUg -3'
miRNA:   3'- -UGGGCAGUUGUGCUuu-------CGCGGgaGCG- -5'
12833 3' -55.2 NC_003387.1 + 45699 0.71 0.447711
Target:  5'- -gCCGUUgAACGCGAAAGCGgCCgagcugcugCGCg -3'
miRNA:   3'- ugGGCAG-UUGUGCUUUCGCgGGa--------GCG- -5'
12833 3' -55.2 NC_003387.1 + 50311 0.77 0.18812
Target:  5'- -gCCGUCAACGCGAu-GCGCCC-CGa -3'
miRNA:   3'- ugGGCAGUUGUGCUuuCGCGGGaGCg -5'
12833 3' -55.2 NC_003387.1 + 36231 0.75 0.257988
Target:  5'- -gUCGUC-GCAUGAAgGGCGCUCUCGCa -3'
miRNA:   3'- ugGGCAGuUGUGCUU-UCGCGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.