miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12833 3' -55.2 NC_003387.1 + 120 0.79 0.143179
Target:  5'- cGCCCGccUCGAUGCGGu--CGCCCUCGCg -3'
miRNA:   3'- -UGGGC--AGUUGUGCUuucGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 1578 0.71 0.447711
Target:  5'- cCCCGUCGugAaagucaGAc-GCGCCCUgGCa -3'
miRNA:   3'- uGGGCAGUugUg-----CUuuCGCGGGAgCG- -5'
12833 3' -55.2 NC_003387.1 + 1750 0.67 0.648267
Target:  5'- cCCCGgccgcuaUCGGCuCGggGGCGC-UUCGCg -3'
miRNA:   3'- uGGGC-------AGUUGuGCuuUCGCGgGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 1761 0.7 0.477652
Target:  5'- aGCCCGgCGGCgGCGcuGGCGCCCgaGCu -3'
miRNA:   3'- -UGGGCaGUUG-UGCuuUCGCGGGagCG- -5'
12833 3' -55.2 NC_003387.1 + 1828 0.67 0.660348
Target:  5'- uGCCC-UCGACGuCGA---CGCCCUCGa -3'
miRNA:   3'- -UGGGcAGUUGU-GCUuucGCGGGAGCg -5'
12833 3' -55.2 NC_003387.1 + 1897 0.67 0.682222
Target:  5'- aGCCCG-C-GC-UGAAuGaCGCCCUCGCu -3'
miRNA:   3'- -UGGGCaGuUGuGCUUuC-GCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 2158 0.68 0.58349
Target:  5'- gGCCUguugagguGUCAACAC-AAAGCGCCCcccgaGCc -3'
miRNA:   3'- -UGGG--------CAGUUGUGcUUUCGCGGGag---CG- -5'
12833 3' -55.2 NC_003387.1 + 2355 0.66 0.725308
Target:  5'- -gCCGUCGGCGuCGA--GCGCCaCguaCGCg -3'
miRNA:   3'- ugGGCAGUUGU-GCUuuCGCGG-Ga--GCG- -5'
12833 3' -55.2 NC_003387.1 + 2582 0.67 0.682222
Target:  5'- gACCCGUCGgucgACGCcu-GGCcgcaguacGCCCUCGa -3'
miRNA:   3'- -UGGGCAGU----UGUGcuuUCG--------CGGGAGCg -5'
12833 3' -55.2 NC_003387.1 + 3150 0.66 0.693093
Target:  5'- cGCCCGgCAGCG----GGCGCaCCUCGg -3'
miRNA:   3'- -UGGGCaGUUGUgcuuUCGCG-GGAGCg -5'
12833 3' -55.2 NC_003387.1 + 3491 0.66 0.724245
Target:  5'- cGCuuGUCGACaaacugcugucgaACGAAccggcgccAGUGCCCcCGCc -3'
miRNA:   3'- -UGggCAGUUG-------------UGCUU--------UCGCGGGaGCG- -5'
12833 3' -55.2 NC_003387.1 + 3801 0.67 0.649366
Target:  5'- aACCCGcCGGCA--AAAGUGCCaaCGCg -3'
miRNA:   3'- -UGGGCaGUUGUgcUUUCGCGGgaGCG- -5'
12833 3' -55.2 NC_003387.1 + 4314 0.71 0.400235
Target:  5'- gACCCGgcaguggcUCAACGCcgaGAAGGCGCaCCagCGCa -3'
miRNA:   3'- -UGGGC--------AGUUGUG---CUUUCGCG-GGa-GCG- -5'
12833 3' -55.2 NC_003387.1 + 4650 0.66 0.714647
Target:  5'- cACCCGUCGAgGCGcuucGGGGCGCgguaGCg -3'
miRNA:   3'- -UGGGCAGUUgUGC----UUUCGCGggagCG- -5'
12833 3' -55.2 NC_003387.1 + 5395 0.77 0.18812
Target:  5'- gACCUGUCAACACGAAAaCGCCgCaaGCg -3'
miRNA:   3'- -UGGGCAGUUGUGCUUUcGCGG-GagCG- -5'
12833 3' -55.2 NC_003387.1 + 5422 0.7 0.49815
Target:  5'- aGCCCGccgaggacaacUCGAC-CGAGGGCGCCgaCGg -3'
miRNA:   3'- -UGGGC-----------AGUUGuGCUUUCGCGGgaGCg -5'
12833 3' -55.2 NC_003387.1 + 5825 0.66 0.693093
Target:  5'- cCCCGcgCAAgGCGgcGGCGgCCUCa- -3'
miRNA:   3'- uGGGCa-GUUgUGCuuUCGCgGGAGcg -5'
12833 3' -55.2 NC_003387.1 + 6339 0.74 0.26468
Target:  5'- -gCUGUCAACACGcu-GCGCCCaccgugUCGCg -3'
miRNA:   3'- ugGGCAGUUGUGCuuuCGCGGG------AGCG- -5'
12833 3' -55.2 NC_003387.1 + 6946 0.68 0.59442
Target:  5'- gGCCUGcgCAGCgGCGGgcAGGCGCCacagCGCg -3'
miRNA:   3'- -UGGGCa-GUUG-UGCU--UUCGCGGga--GCG- -5'
12833 3' -55.2 NC_003387.1 + 7207 0.72 0.373335
Target:  5'- cACaCCGUCAGCuCGcu-GCgGCCCUUGCa -3'
miRNA:   3'- -UG-GGCAGUUGuGCuuuCG-CGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.