miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12833 3' -55.2 NC_003387.1 + 22848 1.11 0.000799
Target:  5'- gACCCGUCAACACGAAAGCGCCCUCGCc -3'
miRNA:   3'- -UGGGCAGUUGUGCUUUCGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 120 0.79 0.143179
Target:  5'- cGCCCGccUCGAUGCGGu--CGCCCUCGCg -3'
miRNA:   3'- -UGGGC--AGUUGUGCUuucGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 8253 0.79 0.143179
Target:  5'- cACCCGUC-ACGCGGGcgugcAGCGC-CUCGCg -3'
miRNA:   3'- -UGGGCAGuUGUGCUU-----UCGCGgGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 19676 0.78 0.159843
Target:  5'- cACCCGgugCGGCACG---GUGCCCUCGUa -3'
miRNA:   3'- -UGGGCa--GUUGUGCuuuCGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 45569 0.77 0.173468
Target:  5'- aGCUCGUCGGCACGGccgagGAGCcgGgCCUCGCg -3'
miRNA:   3'- -UGGGCAGUUGUGCU-----UUCG--CgGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 34516 0.77 0.173468
Target:  5'- cGCCgGUCGuCGCGucgccGAGGCGCaCCUCGCa -3'
miRNA:   3'- -UGGgCAGUuGUGC-----UUUCGCG-GGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 29857 0.77 0.178236
Target:  5'- cCCUGUCGAUucgucgGCGAGGGCGCUUUCGUg -3'
miRNA:   3'- uGGGCAGUUG------UGCUUUCGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 5395 0.77 0.18812
Target:  5'- gACCUGUCAACACGAAAaCGCCgCaaGCg -3'
miRNA:   3'- -UGGGCAGUUGUGCUUUcGCGG-GagCG- -5'
12833 3' -55.2 NC_003387.1 + 50311 0.77 0.18812
Target:  5'- -gCCGUCAACGCGAu-GCGCCC-CGa -3'
miRNA:   3'- ugGGCAGUUGUGCUuuCGCGGGaGCg -5'
12833 3' -55.2 NC_003387.1 + 14201 0.76 0.209342
Target:  5'- gACgCCGUCGGCGCucacuuGcCGCCCUCGCa -3'
miRNA:   3'- -UG-GGCAGUUGUGcuuu--C-GCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 16473 0.76 0.214961
Target:  5'- aGCCCGgcguaAACcauuGCGAGAGCGCCCUucaUGCg -3'
miRNA:   3'- -UGGGCag---UUG----UGCUUUCGCGGGA---GCG- -5'
12833 3' -55.2 NC_003387.1 + 37267 0.75 0.238741
Target:  5'- gGCCCG-CGugGCGGucaAGGCGCCUggCGCg -3'
miRNA:   3'- -UGGGCaGUugUGCU---UUCGCGGGa-GCG- -5'
12833 3' -55.2 NC_003387.1 + 37370 0.75 0.245019
Target:  5'- cACCUGUCGG-GCGgcGGCGCCC-CGCu -3'
miRNA:   3'- -UGGGCAGUUgUGCuuUCGCGGGaGCG- -5'
12833 3' -55.2 NC_003387.1 + 17557 0.75 0.257988
Target:  5'- -aCCGUUcGCGCGucAGCccGCCCUCGCu -3'
miRNA:   3'- ugGGCAGuUGUGCuuUCG--CGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 36231 0.75 0.257988
Target:  5'- -gUCGUC-GCAUGAAgGGCGCUCUCGCa -3'
miRNA:   3'- ugGGCAGuUGUGCUU-UCGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 6339 0.74 0.26468
Target:  5'- -gCUGUCAACACGcu-GCGCCCaccgugUCGCg -3'
miRNA:   3'- ugGGCAGUUGUGCuuuCGCGGG------AGCG- -5'
12833 3' -55.2 NC_003387.1 + 44437 0.74 0.271513
Target:  5'- uGCCCGcCGACGCGcacGAGGCGCUg-CGCg -3'
miRNA:   3'- -UGGGCaGUUGUGC---UUUCGCGGgaGCG- -5'
12833 3' -55.2 NC_003387.1 + 21512 0.74 0.285601
Target:  5'- aACCCaggCAACGCGAuucAGGCGCgCgUCGCg -3'
miRNA:   3'- -UGGGca-GUUGUGCU---UUCGCG-GgAGCG- -5'
12833 3' -55.2 NC_003387.1 + 35812 0.74 0.285601
Target:  5'- gGCgCCGUCGGCGCGA---UGCUCUCGUa -3'
miRNA:   3'- -UG-GGCAGUUGUGCUuucGCGGGAGCG- -5'
12833 3' -55.2 NC_003387.1 + 19153 0.74 0.292859
Target:  5'- gGCUCGUCGACGCugucGAGGGCGCggCC-CGCa -3'
miRNA:   3'- -UGGGCAGUUGUG----CUUUCGCG--GGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.