miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 21942 0.96 0.01282
Target:  5'- gAAGAUCAACGACCG-GAGCAGUACACg -3'
miRNA:   3'- -UUCUAGUUGCUGGCgCUCGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 2156 0.76 0.286838
Target:  5'- gAGGAcUCGAUGAgCCGCGAGCAGcucgGCGCc -3'
miRNA:   3'- -UUCU-AGUUGCU-GGCGCUCGUCa---UGUG- -5'
12835 5' -52.1 NC_003387.1 + 50177 0.76 0.294413
Target:  5'- gAGGAUCugccgcGGCGACCGCGuGCGGaACACc -3'
miRNA:   3'- -UUCUAG------UUGCUGGCGCuCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 27654 0.76 0.302144
Target:  5'- uGGGUCAACGGCgGCG-GCAGUAUcucGCa -3'
miRNA:   3'- uUCUAGUUGCUGgCGCuCGUCAUG---UG- -5'
12835 5' -52.1 NC_003387.1 + 29465 0.74 0.406959
Target:  5'- cGAGAaCGGCG-CCaGCGAGCAGgGCACg -3'
miRNA:   3'- -UUCUaGUUGCuGG-CGCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 3740 0.73 0.44662
Target:  5'- -cGAUCGACGGCCGCauGCccgcGUGCACg -3'
miRNA:   3'- uuCUAGUUGCUGGCGcuCGu---CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 33758 0.73 0.456868
Target:  5'- cAAGggCAACGgcggcGCCGCGAGCGGuUugGCc -3'
miRNA:   3'- -UUCuaGUUGC-----UGGCGCUCGUC-AugUG- -5'
12835 5' -52.1 NC_003387.1 + 21869 0.72 0.466198
Target:  5'- cAGuUC-ACGGCCGCGGGCAacuacacGUACGCg -3'
miRNA:   3'- uUCuAGuUGCUGGCGCUCGU-------CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 29305 0.72 0.488342
Target:  5'- ----cCGGCGACCGCGGGCAcGaGCGCc -3'
miRNA:   3'- uucuaGUUGCUGGCGCUCGU-CaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 34114 0.72 0.49906
Target:  5'- cAGAUCGGCGGCguCGaCGucGCGGUGCGCg -3'
miRNA:   3'- uUCUAGUUGCUG--GC-GCu-CGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 39744 0.72 0.49906
Target:  5'- cGAGAuuaUCGACGACCagcucgcCGAcGCGGUGCGCa -3'
miRNA:   3'- -UUCU---AGUUGCUGGc------GCU-CGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 14688 0.71 0.520798
Target:  5'- -cGAUCGggGCGccgucGCCGCGAuccguuGCGGUGCACg -3'
miRNA:   3'- uuCUAGU--UGC-----UGGCGCU------CGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 42813 0.71 0.542896
Target:  5'- -cGAUC-ACGugUGCGAGCAGguaauCGCu -3'
miRNA:   3'- uuCUAGuUGCugGCGCUCGUCau---GUG- -5'
12835 5' -52.1 NC_003387.1 + 14916 0.71 0.542896
Target:  5'- -cGAUCGcgcgcugcuGCGACCGCGGGUgcUGCGCc -3'
miRNA:   3'- uuCUAGU---------UGCUGGCGCUCGucAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 18393 0.71 0.542896
Target:  5'- -cGAUCGGCugcgacgggucGGCCGCGGGCAGcGCGg -3'
miRNA:   3'- uuCUAGUUG-----------CUGGCGCUCGUCaUGUg -5'
12835 5' -52.1 NC_003387.1 + 1369 0.71 0.554062
Target:  5'- ----cCGACGACCGCucGCAGUgGCGCa -3'
miRNA:   3'- uucuaGUUGCUGGCGcuCGUCA-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 42196 0.71 0.554062
Target:  5'- cGAGGcgGGCGugCGCGAGCAGgacggcgaccgGCGCa -3'
miRNA:   3'- -UUCUagUUGCugGCGCUCGUCa----------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 38492 0.71 0.576586
Target:  5'- -cGAUCccgAGCGGCCGUGGGC-GUGCGa -3'
miRNA:   3'- uuCUAG---UUGCUGGCGCUCGuCAUGUg -5'
12835 5' -52.1 NC_003387.1 + 26734 0.71 0.576586
Target:  5'- uGGAUC-GCGACCccgGCGAGCGGcAUACc -3'
miRNA:   3'- uUCUAGuUGCUGG---CGCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 20966 0.7 0.599308
Target:  5'- cGGGcUCGGCGACCagguCGAGCAGggACACc -3'
miRNA:   3'- -UUCuAGUUGCUGGc---GCUCGUCa-UGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.