miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 20966 0.7 0.599308
Target:  5'- cGGGcUCGGCGACCagguCGAGCAGggACACc -3'
miRNA:   3'- -UUCuAGUUGCUGGc---GCUCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 6701 0.7 0.62215
Target:  5'- ---cUCGGCGucuugcACCGCGGGCAGUuCACc -3'
miRNA:   3'- uucuAGUUGC------UGGCGCUCGUCAuGUG- -5'
12835 5' -52.1 NC_003387.1 + 35661 0.7 0.62215
Target:  5'- -cGA-CcuCGACCGCGGGCGGUggcugagcggGCACg -3'
miRNA:   3'- uuCUaGuuGCUGGCGCUCGUCA----------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 41621 0.7 0.63359
Target:  5'- cGAGuUCGACGACCGCGcccaAGCuaagGCGCu -3'
miRNA:   3'- -UUCuAGUUGCUGGCGC----UCGuca-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 21299 0.7 0.63359
Target:  5'- --cGUCGA-GGCCGuCGAGCAGUgGCGCg -3'
miRNA:   3'- uucUAGUUgCUGGC-GCUCGUCA-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 13212 0.69 0.645029
Target:  5'- cAAGGUCAACGACaagcugaccgaCGcCGAGCAGgccgACAg -3'
miRNA:   3'- -UUCUAGUUGCUG-----------GC-GCUCGUCa---UGUg -5'
12835 5' -52.1 NC_003387.1 + 43826 0.69 0.645029
Target:  5'- -cGAUCGGCGagggcgagGCCGaggucgGGGCGGUGCACc -3'
miRNA:   3'- uuCUAGUUGC--------UGGCg-----CUCGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 49662 0.69 0.667858
Target:  5'- uGGGUCGACGucggaGCgGuCGAGCAGUGCu- -3'
miRNA:   3'- uUCUAGUUGC-----UGgC-GCUCGUCAUGug -5'
12835 5' -52.1 NC_003387.1 + 37983 0.69 0.672409
Target:  5'- cAGAUCGucgacgccuggcugcGCGACCGC-AGCAagccGUGCACc -3'
miRNA:   3'- uUCUAGU---------------UGCUGGCGcUCGU----CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 6581 0.69 0.679223
Target:  5'- uAGAaCGACGACCGCG-GCAccuCACg -3'
miRNA:   3'- uUCUaGUUGCUGGCGCuCGUcauGUG- -5'
12835 5' -52.1 NC_003387.1 + 15426 0.69 0.679223
Target:  5'- -cGGUCGACGACCGCgccgacGAGCGcgccagGCGCc -3'
miRNA:   3'- uuCUAGUUGCUGGCG------CUCGUca----UGUG- -5'
12835 5' -52.1 NC_003387.1 + 71 0.69 0.679223
Target:  5'- -cGAUCGGCG-CCGCGGGC-GUuuGCu -3'
miRNA:   3'- uuCUAGUUGCuGGCGCUCGuCAugUG- -5'
12835 5' -52.1 NC_003387.1 + 28862 0.69 0.690541
Target:  5'- cGGGUCGGacugGuACCGCGAGCGGcacgGCGCc -3'
miRNA:   3'- uUCUAGUUg---C-UGGCGCUCGUCa---UGUG- -5'
12835 5' -52.1 NC_003387.1 + 10619 0.68 0.712981
Target:  5'- -cGGUCAugcaggacGCGACCGCG-GCGGUGa-- -3'
miRNA:   3'- uuCUAGU--------UGCUGGCGCuCGUCAUgug -5'
12835 5' -52.1 NC_003387.1 + 31211 0.68 0.724079
Target:  5'- cAGcgCAGCGGCCGgcuCGuGCAGcgACACg -3'
miRNA:   3'- uUCuaGUUGCUGGC---GCuCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 24894 0.68 0.724079
Target:  5'- --uGUCGAacuCGACCGaCGGGCGGUACu- -3'
miRNA:   3'- uucUAGUU---GCUGGC-GCUCGUCAUGug -5'
12835 5' -52.1 NC_003387.1 + 5591 0.68 0.724079
Target:  5'- aAAGAUCcGCGACgGCGAaaagagcgagcuGCAGaagGCGCu -3'
miRNA:   3'- -UUCUAGuUGCUGgCGCU------------CGUCa--UGUG- -5'
12835 5' -52.1 NC_003387.1 + 12293 0.68 0.735077
Target:  5'- cGGAUCAGCGGgC-CGGGCAccgGCACg -3'
miRNA:   3'- uUCUAGUUGCUgGcGCUCGUca-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 629 0.68 0.745964
Target:  5'- cGAGggCAGCGucgccGCCGCG-GCAGcgACGCc -3'
miRNA:   3'- -UUCuaGUUGC-----UGGCGCuCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 34439 0.68 0.745964
Target:  5'- cGGGUCGGCG-CUGguCGAGUAGUGCGg -3'
miRNA:   3'- uUCUAGUUGCuGGC--GCUCGUCAUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.