miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 14916 0.71 0.542896
Target:  5'- -cGAUCGcgcgcugcuGCGACCGCGGGUgcUGCGCc -3'
miRNA:   3'- uuCUAGU---------UGCUGGCGCUCGucAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 15426 0.69 0.679223
Target:  5'- -cGGUCGACGACCGCgccgacGAGCGcgccagGCGCc -3'
miRNA:   3'- uuCUAGUUGCUGGCG------CUCGUca----UGUG- -5'
12835 5' -52.1 NC_003387.1 + 18393 0.71 0.542896
Target:  5'- -cGAUCGGCugcgacgggucGGCCGCGGGCAGcGCGg -3'
miRNA:   3'- uuCUAGUUG-----------CUGGCGCUCGUCaUGUg -5'
12835 5' -52.1 NC_003387.1 + 19456 0.67 0.756726
Target:  5'- gGGGAUCGGCGGCagGcCGGGCAGgACGu -3'
miRNA:   3'- -UUCUAGUUGCUGg-C-GCUCGUCaUGUg -5'
12835 5' -52.1 NC_003387.1 + 20080 0.66 0.807233
Target:  5'- cAAGGUgAACGACgGCGAccgcucugugaucGCcaGGUACACc -3'
miRNA:   3'- -UUCUAgUUGCUGgCGCU-------------CG--UCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 20966 0.7 0.599308
Target:  5'- cGGGcUCGGCGACCagguCGAGCAGggACACc -3'
miRNA:   3'- -UUCuAGUUGCUGGc---GCUCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 21299 0.7 0.63359
Target:  5'- --cGUCGA-GGCCGuCGAGCAGUgGCGCg -3'
miRNA:   3'- uucUAGUUgCUGGC-GCUCGUCA-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 21869 0.72 0.466198
Target:  5'- cAGuUC-ACGGCCGCGGGCAacuacacGUACGCg -3'
miRNA:   3'- uUCuAGuUGCUGGCGCUCGU-------CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 21942 0.96 0.01282
Target:  5'- gAAGAUCAACGACCG-GAGCAGUACACg -3'
miRNA:   3'- -UUCUAGUUGCUGGCgCUCGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 22474 0.66 0.808219
Target:  5'- ---cUCGACGACCGCG-GCGucGUAC-Cg -3'
miRNA:   3'- uucuAGUUGCUGGCGCuCGU--CAUGuG- -5'
12835 5' -52.1 NC_003387.1 + 23641 0.67 0.756726
Target:  5'- cGAGAUgaaccugcaCAGCG-CCGCGAcGCAGUuuaugACGCg -3'
miRNA:   3'- -UUCUA---------GUUGCuGGCGCU-CGUCA-----UGUG- -5'
12835 5' -52.1 NC_003387.1 + 24894 0.68 0.724079
Target:  5'- --uGUCGAacuCGACCGaCGGGCGGUACu- -3'
miRNA:   3'- uucUAGUU---GCUGGC-GCUCGUCAUGug -5'
12835 5' -52.1 NC_003387.1 + 26734 0.71 0.576586
Target:  5'- uGGAUC-GCGACCccgGCGAGCGGcAUACc -3'
miRNA:   3'- uUCUAGuUGCUGG---CGCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 27654 0.76 0.302144
Target:  5'- uGGGUCAACGGCgGCG-GCAGUAUcucGCa -3'
miRNA:   3'- uUCUAGUUGCUGgCGCuCGUCAUG---UG- -5'
12835 5' -52.1 NC_003387.1 + 27931 0.66 0.827505
Target:  5'- cAGGUCGgccGCGACC-CGAGCGGUuccgGCu -3'
miRNA:   3'- uUCUAGU---UGCUGGcGCUCGUCAug--UG- -5'
12835 5' -52.1 NC_003387.1 + 28862 0.69 0.690541
Target:  5'- cGGGUCGGacugGuACCGCGAGCGGcacgGCGCc -3'
miRNA:   3'- uUCUAGUUg---C-UGGCGCUCGUCa---UGUG- -5'
12835 5' -52.1 NC_003387.1 + 29242 0.67 0.766294
Target:  5'- -cGAUCc-CGGCCGacaagguCGAGCAGUACGa -3'
miRNA:   3'- uuCUAGuuGCUGGC-------GCUCGUCAUGUg -5'
12835 5' -52.1 NC_003387.1 + 29305 0.72 0.488342
Target:  5'- ----cCGGCGACCGCGGGCAcGaGCGCc -3'
miRNA:   3'- uucuaGUUGCUGGCGCUCGU-CaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 29465 0.74 0.406959
Target:  5'- cGAGAaCGGCG-CCaGCGAGCAGgGCACg -3'
miRNA:   3'- -UUCUaGUUGCuGG-CGCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 29987 0.67 0.788136
Target:  5'- cAAGGcgAGCGACCGCGAGU---ACGCc -3'
miRNA:   3'- -UUCUagUUGCUGGCGCUCGucaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.