miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 71 0.69 0.679223
Target:  5'- -cGAUCGGCG-CCGCGGGC-GUuuGCu -3'
miRNA:   3'- uuCUAGUUGCuGGCGCUCGuCAugUG- -5'
12835 5' -52.1 NC_003387.1 + 343 0.68 0.750284
Target:  5'- cAAGAUCcGCGugCGCGcggucgaucugcgcgAGCGGUuccGCGCc -3'
miRNA:   3'- -UUCUAGuUGCugGCGC---------------UCGUCA---UGUG- -5'
12835 5' -52.1 NC_003387.1 + 629 0.68 0.745964
Target:  5'- cGAGggCAGCGucgccGCCGCG-GCAGcgACGCc -3'
miRNA:   3'- -UUCuaGUUGC-----UGGCGCuCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 1369 0.71 0.554062
Target:  5'- ----cCGACGACCGCucGCAGUgGCGCa -3'
miRNA:   3'- uucuaGUUGCUGGCGcuCGUCA-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 1702 0.67 0.788136
Target:  5'- -cGGUCGACugGAUCGCuGAGCGGgccgggcgGCGCa -3'
miRNA:   3'- uuCUAGUUG--CUGGCG-CUCGUCa-------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 2156 0.76 0.286838
Target:  5'- gAGGAcUCGAUGAgCCGCGAGCAGcucgGCGCc -3'
miRNA:   3'- -UUCU-AGUUGCU-GGCGCUCGUCa---UGUG- -5'
12835 5' -52.1 NC_003387.1 + 2833 0.67 0.756726
Target:  5'- --cGUCAACGGCCGCGAcGCcGacgACAUg -3'
miRNA:   3'- uucUAGUUGCUGGCGCU-CGuCa--UGUG- -5'
12835 5' -52.1 NC_003387.1 + 3740 0.73 0.44662
Target:  5'- -cGAUCGACGGCCGCauGCccgcGUGCACg -3'
miRNA:   3'- uuCUAGUUGCUGGCGcuCGu---CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 3974 0.66 0.852118
Target:  5'- cAAGGcUCGGCGAcCCGCGGgucauggacucgucGCGGcGCACg -3'
miRNA:   3'- -UUCU-AGUUGCU-GGCGCU--------------CGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 4615 0.67 0.777825
Target:  5'- -uGAUCGGCGAgccaCCGCGGGCGcaGCGg -3'
miRNA:   3'- uuCUAGUUGCU----GGCGCUCGUcaUGUg -5'
12835 5' -52.1 NC_003387.1 + 5591 0.68 0.724079
Target:  5'- aAAGAUCcGCGACgGCGAaaagagcgagcuGCAGaagGCGCu -3'
miRNA:   3'- -UUCUAGuUGCUGgCGCU------------CGUCa--UGUG- -5'
12835 5' -52.1 NC_003387.1 + 6581 0.69 0.679223
Target:  5'- uAGAaCGACGACCGCG-GCAccuCACg -3'
miRNA:   3'- uUCUaGUUGCUGGCGCuCGUcauGUG- -5'
12835 5' -52.1 NC_003387.1 + 6701 0.7 0.62215
Target:  5'- ---cUCGGCGucuugcACCGCGGGCAGUuCACc -3'
miRNA:   3'- uucuAGUUGC------UGGCGCUCGUCAuGUG- -5'
12835 5' -52.1 NC_003387.1 + 10619 0.68 0.712981
Target:  5'- -cGGUCAugcaggacGCGACCGCG-GCGGUGa-- -3'
miRNA:   3'- uuCUAGU--------UGCUGGCGCuCGUCAUgug -5'
12835 5' -52.1 NC_003387.1 + 12293 0.68 0.735077
Target:  5'- cGGAUCAGCGGgC-CGGGCAccgGCACg -3'
miRNA:   3'- uUCUAGUUGCUgGcGCUCGUca-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 12808 0.66 0.827505
Target:  5'- ----gCAACGACCGCagucgucgccgGGGCAGUuguggugagGCACg -3'
miRNA:   3'- uucuaGUUGCUGGCG-----------CUCGUCA---------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 13212 0.69 0.645029
Target:  5'- cAAGGUCAACGACaagcugaccgaCGcCGAGCAGgccgACAg -3'
miRNA:   3'- -UUCUAGUUGCUG-----------GC-GCUCGUCa---UGUg -5'
12835 5' -52.1 NC_003387.1 + 13464 0.66 0.808219
Target:  5'- cAAGggCcGCGACgGCGAGgAGgGCACc -3'
miRNA:   3'- -UUCuaGuUGCUGgCGCUCgUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 14247 0.66 0.854744
Target:  5'- cGGGAUCGGgcCGACUGguaaagaaCGGGCAGaACACg -3'
miRNA:   3'- -UUCUAGUU--GCUGGC--------GCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 14688 0.71 0.520798
Target:  5'- -cGAUCGggGCGccgucGCCGCGAuccguuGCGGUGCACg -3'
miRNA:   3'- uuCUAGU--UGC-----UGGCGCU------CGUCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.