miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 52594 0.67 0.76735
Target:  5'- cGGAUCGcgaggGCGACCGCaucgaGGCGG-GCGCg -3'
miRNA:   3'- uUCUAGU-----UGCUGGCGc----UCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 51505 0.67 0.798271
Target:  5'- cAGGAUCAGCGgguuaggcGCCGCGuucgucGCGG-GCACc -3'
miRNA:   3'- -UUCUAGUUGC--------UGGCGCu-----CGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 50982 0.66 0.817968
Target:  5'- -cGA-UAGCGGCCGgGGGCGuuuucguuugcuGUGCACg -3'
miRNA:   3'- uuCUaGUUGCUGGCgCUCGU------------CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 50177 0.76 0.294413
Target:  5'- gAGGAUCugccgcGGCGACCGCGuGCGGaACACc -3'
miRNA:   3'- -UUCUAG------UUGCUGGCGCuCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 49662 0.69 0.667858
Target:  5'- uGGGUCGACGucggaGCgGuCGAGCAGUGCu- -3'
miRNA:   3'- uUCUAGUUGC-----UGgC-GCUCGUCAUGug -5'
12835 5' -52.1 NC_003387.1 + 49650 0.66 0.845904
Target:  5'- aAGGAUCAGguuguacggcuCGACCgagGCGGGCGGgaACGCc -3'
miRNA:   3'- -UUCUAGUU-----------GCUGG---CGCUCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 49376 0.66 0.808219
Target:  5'- --cGUCGACGACCGCGccaaacgagcgGGCcucGGUGuCACg -3'
miRNA:   3'- uucUAGUUGCUGGCGC-----------UCG---UCAU-GUG- -5'
12835 5' -52.1 NC_003387.1 + 47801 0.7 0.599308
Target:  5'- -cGcgCGACG-CCGCGccgGGCAGUGCAg -3'
miRNA:   3'- uuCuaGUUGCuGGCGC---UCGUCAUGUg -5'
12835 5' -52.1 NC_003387.1 + 47010 0.67 0.788136
Target:  5'- -cGGUCAGCGACgaCGCGGGC---ACGCc -3'
miRNA:   3'- uuCUAGUUGCUG--GCGCUCGucaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 43826 0.69 0.645029
Target:  5'- -cGAUCGGCGagggcgagGCCGaggucgGGGCGGUGCACc -3'
miRNA:   3'- uuCUAGUUGC--------UGGCg-----CUCGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 43717 0.66 0.824667
Target:  5'- cAGGugcUCGACGGcggcaugcgggagcCCGCGAGCGuGUugGCg -3'
miRNA:   3'- uUCU---AGUUGCU--------------GGCGCUCGU-CAugUG- -5'
12835 5' -52.1 NC_003387.1 + 42813 0.71 0.542896
Target:  5'- -cGAUC-ACGugUGCGAGCAGguaauCGCu -3'
miRNA:   3'- uuCUAGuUGCugGCGCUCGUCau---GUG- -5'
12835 5' -52.1 NC_003387.1 + 42196 0.71 0.554062
Target:  5'- cGAGGcgGGCGugCGCGAGCAGgacggcgaccgGCGCa -3'
miRNA:   3'- -UUCUagUUGCugGCGCUCGUCa----------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 41866 0.66 0.854744
Target:  5'- gAAGAUCGGCaGACCGCGGuCGGcgaGCu -3'
miRNA:   3'- -UUCUAGUUG-CUGGCGCUcGUCaugUG- -5'
12835 5' -52.1 NC_003387.1 + 41621 0.7 0.63359
Target:  5'- cGAGuUCGACGACCGCGcccaAGCuaagGCGCu -3'
miRNA:   3'- -UUCuAGUUGCUGGCGC----UCGuca-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 39744 0.72 0.49906
Target:  5'- cGAGAuuaUCGACGACCagcucgcCGAcGCGGUGCGCa -3'
miRNA:   3'- -UUCU---AGUUGCUGGc------GCU-CGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 39119 0.66 0.808219
Target:  5'- cGAGGUgcACGACCGU-AGCGGUcaaaaGCACa -3'
miRNA:   3'- -UUCUAguUGCUGGCGcUCGUCA-----UGUG- -5'
12835 5' -52.1 NC_003387.1 + 38492 0.71 0.576586
Target:  5'- -cGAUCccgAGCGGCCGUGGGC-GUGCGa -3'
miRNA:   3'- uuCUAG---UUGCUGGCGCUCGuCAUGUg -5'
12835 5' -52.1 NC_003387.1 + 37983 0.69 0.672409
Target:  5'- cAGAUCGucgacgccuggcugcGCGACCGC-AGCAagccGUGCACc -3'
miRNA:   3'- uUCUAGU---------------UGCUGGCGcUCGU----CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 37556 0.67 0.755656
Target:  5'- -cGAUCAccucGCGGCgCGCGucgagguAGguGUACGCg -3'
miRNA:   3'- uuCUAGU----UGCUG-GCGC-------UCguCAUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.