miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 2156 0.76 0.286838
Target:  5'- gAGGAcUCGAUGAgCCGCGAGCAGcucgGCGCc -3'
miRNA:   3'- -UUCU-AGUUGCU-GGCGCUCGUCa---UGUG- -5'
12835 5' -52.1 NC_003387.1 + 49662 0.69 0.667858
Target:  5'- uGGGUCGACGucggaGCgGuCGAGCAGUGCu- -3'
miRNA:   3'- uUCUAGUUGC-----UGgC-GCUCGUCAUGug -5'
12835 5' -52.1 NC_003387.1 + 28862 0.69 0.690541
Target:  5'- cGGGUCGGacugGuACCGCGAGCGGcacgGCGCc -3'
miRNA:   3'- uUCUAGUUg---C-UGGCGCUCGUCa---UGUG- -5'
12835 5' -52.1 NC_003387.1 + 3974 0.66 0.852118
Target:  5'- cAAGGcUCGGCGAcCCGCGGgucauggacucgucGCGGcGCACg -3'
miRNA:   3'- -UUCU-AGUUGCU-GGCGCU--------------CGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 21869 0.72 0.466198
Target:  5'- cAGuUC-ACGGCCGCGGGCAacuacacGUACGCg -3'
miRNA:   3'- uUCuAGuUGCUGGCGCUCGU-------CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 29305 0.72 0.488342
Target:  5'- ----cCGGCGACCGCGGGCAcGaGCGCc -3'
miRNA:   3'- uucuaGUUGCUGGCGCUCGU-CaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 1369 0.71 0.554062
Target:  5'- ----cCGACGACCGCucGCAGUgGCGCa -3'
miRNA:   3'- uucuaGUUGCUGGCGcuCGUCA-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 42196 0.71 0.554062
Target:  5'- cGAGGcgGGCGugCGCGAGCAGgacggcgaccgGCGCa -3'
miRNA:   3'- -UUCUagUUGCugGCGCUCGUCa----------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 47801 0.7 0.599308
Target:  5'- -cGcgCGACG-CCGCGccgGGCAGUGCAg -3'
miRNA:   3'- uuCuaGUUGCuGGCGC---UCGUCAUGUg -5'
12835 5' -52.1 NC_003387.1 + 13212 0.69 0.645029
Target:  5'- cAAGGUCAACGACaagcugaccgaCGcCGAGCAGgccgACAg -3'
miRNA:   3'- -UUCUAGUUGCUG-----------GC-GCUCGUCa---UGUg -5'
12835 5' -52.1 NC_003387.1 + 41621 0.7 0.63359
Target:  5'- cGAGuUCGACGACCGCGcccaAGCuaagGCGCu -3'
miRNA:   3'- -UUCuAGUUGCUGGCGC----UCGuca-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 26734 0.71 0.576586
Target:  5'- uGGAUC-GCGACCccgGCGAGCGGcAUACc -3'
miRNA:   3'- uUCUAGuUGCUGG---CGCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 27654 0.76 0.302144
Target:  5'- uGGGUCAACGGCgGCG-GCAGUAUcucGCa -3'
miRNA:   3'- uUCUAGUUGCUGgCGCuCGUCAUG---UG- -5'
12835 5' -52.1 NC_003387.1 + 21299 0.7 0.63359
Target:  5'- --cGUCGA-GGCCGuCGAGCAGUgGCGCg -3'
miRNA:   3'- uucUAGUUgCUGGC-GCUCGUCA-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 29465 0.74 0.406959
Target:  5'- cGAGAaCGGCG-CCaGCGAGCAGgGCACg -3'
miRNA:   3'- -UUCUaGUUGCuGG-CGCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 38492 0.71 0.576586
Target:  5'- -cGAUCccgAGCGGCCGUGGGC-GUGCGa -3'
miRNA:   3'- uuCUAG---UUGCUGGCGCUCGuCAUGUg -5'
12835 5' -52.1 NC_003387.1 + 43826 0.69 0.645029
Target:  5'- -cGAUCGGCGagggcgagGCCGaggucgGGGCGGUGCACc -3'
miRNA:   3'- uuCUAGUUGC--------UGGCg-----CUCGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 37983 0.69 0.672409
Target:  5'- cAGAUCGucgacgccuggcugcGCGACCGC-AGCAagccGUGCACc -3'
miRNA:   3'- uUCUAGU---------------UGCUGGCGcUCGU----CAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 33758 0.73 0.456868
Target:  5'- cAAGggCAACGgcggcGCCGCGAGCGGuUugGCc -3'
miRNA:   3'- -UUCuaGUUGC-----UGGCGCUCGUC-AugUG- -5'
12835 5' -52.1 NC_003387.1 + 39744 0.72 0.49906
Target:  5'- cGAGAuuaUCGACGACCagcucgcCGAcGCGGUGCGCa -3'
miRNA:   3'- -UUCU---AGUUGCUGGc------GCU-CGUCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.