miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12835 5' -52.1 NC_003387.1 + 20966 0.7 0.599308
Target:  5'- cGGGcUCGGCGACCagguCGAGCAGggACACc -3'
miRNA:   3'- -UUCuAGUUGCUGGc---GCUCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 37556 0.67 0.755656
Target:  5'- -cGAUCAccucGCGGCgCGCGucgagguAGguGUACGCg -3'
miRNA:   3'- uuCUAGU----UGCUG-GCGC-------UCguCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 34439 0.68 0.745964
Target:  5'- cGGGUCGGCG-CUGguCGAGUAGUGCGg -3'
miRNA:   3'- uUCUAGUUGCuGGC--GCUCGUCAUGUg -5'
12835 5' -52.1 NC_003387.1 + 31211 0.68 0.724079
Target:  5'- cAGcgCAGCGGCCGgcuCGuGCAGcgACACg -3'
miRNA:   3'- uUCuaGUUGCUGGC---GCuCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 24894 0.68 0.724079
Target:  5'- --uGUCGAacuCGACCGaCGGGCGGUACu- -3'
miRNA:   3'- uucUAGUU---GCUGGC-GCUCGUCAUGug -5'
12835 5' -52.1 NC_003387.1 + 71 0.69 0.679223
Target:  5'- -cGAUCGGCG-CCGCGGGC-GUuuGCu -3'
miRNA:   3'- uuCUAGUUGCuGGCGCUCGuCAugUG- -5'
12835 5' -52.1 NC_003387.1 + 15426 0.69 0.679223
Target:  5'- -cGGUCGACGACCGCgccgacGAGCGcgccagGCGCc -3'
miRNA:   3'- uuCUAGUUGCUGGCG------CUCGUca----UGUG- -5'
12835 5' -52.1 NC_003387.1 + 6581 0.69 0.679223
Target:  5'- uAGAaCGACGACCGCG-GCAccuCACg -3'
miRNA:   3'- uUCUaGUUGCUGGCGCuCGUcauGUG- -5'
12835 5' -52.1 NC_003387.1 + 6701 0.7 0.62215
Target:  5'- ---cUCGGCGucuugcACCGCGGGCAGUuCACc -3'
miRNA:   3'- uucuAGUUGC------UGGCGCUCGUCAuGUG- -5'
12835 5' -52.1 NC_003387.1 + 19456 0.67 0.756726
Target:  5'- gGGGAUCGGCGGCagGcCGGGCAGgACGu -3'
miRNA:   3'- -UUCUAGUUGCUGg-C-GCUCGUCaUGUg -5'
12835 5' -52.1 NC_003387.1 + 52594 0.67 0.76735
Target:  5'- cGGAUCGcgaggGCGACCGCaucgaGGCGG-GCGCg -3'
miRNA:   3'- uUCUAGU-----UGCUGGCGc----UCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 4615 0.67 0.777825
Target:  5'- -uGAUCGGCGAgccaCCGCGGGCGcaGCGg -3'
miRNA:   3'- uuCUAGUUGCU----GGCGCUCGUcaUGUg -5'
12835 5' -52.1 NC_003387.1 + 14247 0.66 0.854744
Target:  5'- cGGGAUCGGgcCGACUGguaaagaaCGGGCAGaACACg -3'
miRNA:   3'- -UUCUAGUU--GCUGGC--------GCUCGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 49650 0.66 0.845904
Target:  5'- aAGGAUCAGguuguacggcuCGACCgagGCGGGCGGgaACGCc -3'
miRNA:   3'- -UUCUAGUU-----------GCUGG---CGCUCGUCa-UGUG- -5'
12835 5' -52.1 NC_003387.1 + 12808 0.66 0.827505
Target:  5'- ----gCAACGACCGCagucgucgccgGGGCAGUuguggugagGCACg -3'
miRNA:   3'- uucuaGUUGCUGGCG-----------CUCGUCA---------UGUG- -5'
12835 5' -52.1 NC_003387.1 + 31432 0.66 0.817002
Target:  5'- ---cUCGACGGCCuCGAcgacgacGCGGUGCGCc -3'
miRNA:   3'- uucuAGUUGCUGGcGCU-------CGUCAUGUG- -5'
12835 5' -52.1 NC_003387.1 + 49376 0.66 0.808219
Target:  5'- --cGUCGACGACCGCGccaaacgagcgGGCcucGGUGuCACg -3'
miRNA:   3'- uucUAGUUGCUGGCGC-----------UCG---UCAU-GUG- -5'
12835 5' -52.1 NC_003387.1 + 22474 0.66 0.808219
Target:  5'- ---cUCGACGACCGCG-GCGucGUAC-Cg -3'
miRNA:   3'- uucuAGUUGCUGGCGCuCGU--CAUGuG- -5'
12835 5' -52.1 NC_003387.1 + 51505 0.67 0.798271
Target:  5'- cAGGAUCAGCGgguuaggcGCCGCGuucgucGCGG-GCACc -3'
miRNA:   3'- -UUCUAGUUGC--------UGGCGCu-----CGUCaUGUG- -5'
12835 5' -52.1 NC_003387.1 + 47010 0.67 0.788136
Target:  5'- -cGGUCAGCGACgaCGCGGGC---ACGCc -3'
miRNA:   3'- uuCUAGUUGCUG--GCGCUCGucaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.