Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12835 | 5' | -52.1 | NC_003387.1 | + | 10619 | 0.68 | 0.712981 |
Target: 5'- -cGGUCAugcaggacGCGACCGCG-GCGGUGa-- -3' miRNA: 3'- uuCUAGU--------UGCUGGCGCuCGUCAUgug -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 37983 | 0.69 | 0.672409 |
Target: 5'- cAGAUCGucgacgccuggcugcGCGACCGC-AGCAagccGUGCACc -3' miRNA: 3'- uUCUAGU---------------UGCUGGCGcUCGU----CAUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 43826 | 0.69 | 0.645029 |
Target: 5'- -cGAUCGGCGagggcgagGCCGaggucgGGGCGGUGCACc -3' miRNA: 3'- uuCUAGUUGC--------UGGCg-----CUCGUCAUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 3974 | 0.66 | 0.852118 |
Target: 5'- cAAGGcUCGGCGAcCCGCGGgucauggacucgucGCGGcGCACg -3' miRNA: 3'- -UUCU-AGUUGCU-GGCGCU--------------CGUCaUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 1702 | 0.67 | 0.788136 |
Target: 5'- -cGGUCGACugGAUCGCuGAGCGGgccgggcgGCGCa -3' miRNA: 3'- uuCUAGUUG--CUGGCG-CUCGUCa-------UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 5591 | 0.68 | 0.724079 |
Target: 5'- aAAGAUCcGCGACgGCGAaaagagcgagcuGCAGaagGCGCu -3' miRNA: 3'- -UUCUAGuUGCUGgCGCU------------CGUCa--UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 21299 | 0.7 | 0.63359 |
Target: 5'- --cGUCGA-GGCCGuCGAGCAGUgGCGCg -3' miRNA: 3'- uucUAGUUgCUGGC-GCUCGUCA-UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 29987 | 0.67 | 0.788136 |
Target: 5'- cAAGGcgAGCGACCGCGAGU---ACGCc -3' miRNA: 3'- -UUCUagUUGCUGGCGCUCGucaUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 41621 | 0.7 | 0.63359 |
Target: 5'- cGAGuUCGACGACCGCGcccaAGCuaagGCGCu -3' miRNA: 3'- -UUCuAGUUGCUGGCGC----UCGuca-UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 12293 | 0.68 | 0.735077 |
Target: 5'- cGGAUCAGCGGgC-CGGGCAccgGCACg -3' miRNA: 3'- uUCUAGUUGCUgGcGCUCGUca-UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 2833 | 0.67 | 0.756726 |
Target: 5'- --cGUCAACGGCCGCGAcGCcGacgACAUg -3' miRNA: 3'- uucUAGUUGCUGGCGCU-CGuCa--UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 20080 | 0.66 | 0.807233 |
Target: 5'- cAAGGUgAACGACgGCGAccgcucugugaucGCcaGGUACACc -3' miRNA: 3'- -UUCUAgUUGCUGgCGCU-------------CG--UCAUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 28862 | 0.69 | 0.690541 |
Target: 5'- cGGGUCGGacugGuACCGCGAGCGGcacgGCGCc -3' miRNA: 3'- uUCUAGUUg---C-UGGCGCUCGUCa---UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 49662 | 0.69 | 0.667858 |
Target: 5'- uGGGUCGACGucggaGCgGuCGAGCAGUGCu- -3' miRNA: 3'- uUCUAGUUGC-----UGgC-GCUCGUCAUGug -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 13212 | 0.69 | 0.645029 |
Target: 5'- cAAGGUCAACGACaagcugaccgaCGcCGAGCAGgccgACAg -3' miRNA: 3'- -UUCUAGUUGCUG-----------GC-GCUCGUCa---UGUg -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 35661 | 0.7 | 0.62215 |
Target: 5'- -cGA-CcuCGACCGCGGGCGGUggcugagcggGCACg -3' miRNA: 3'- uuCUaGuuGCUGGCGCUCGUCA----------UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 50982 | 0.66 | 0.817968 |
Target: 5'- -cGA-UAGCGGCCGgGGGCGuuuucguuugcuGUGCACg -3' miRNA: 3'- uuCUaGUUGCUGGCgCUCGU------------CAUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 34439 | 0.68 | 0.745964 |
Target: 5'- cGGGUCGGCG-CUGguCGAGUAGUGCGg -3' miRNA: 3'- uUCUAGUUGCuGGC--GCUCGUCAUGUg -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 50177 | 0.76 | 0.294413 |
Target: 5'- gAGGAUCugccgcGGCGACCGCGuGCGGaACACc -3' miRNA: 3'- -UUCUAG------UUGCUGGCGCuCGUCaUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 21942 | 0.96 | 0.01282 |
Target: 5'- gAAGAUCAACGACCG-GAGCAGUACACg -3' miRNA: 3'- -UUCUAGUUGCUGGCgCUCGUCAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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