Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12835 | 5' | -52.1 | NC_003387.1 | + | 29242 | 0.67 | 0.766294 |
Target: 5'- -cGAUCc-CGGCCGacaagguCGAGCAGUACGa -3' miRNA: 3'- uuCUAGuuGCUGGC-------GCUCGUCAUGUg -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 23641 | 0.67 | 0.756726 |
Target: 5'- cGAGAUgaaccugcaCAGCG-CCGCGAcGCAGUuuaugACGCg -3' miRNA: 3'- -UUCUA---------GUUGCuGGCGCU-CGUCA-----UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 2833 | 0.67 | 0.756726 |
Target: 5'- --cGUCAACGGCCGCGAcGCcGacgACAUg -3' miRNA: 3'- uucUAGUUGCUGGCGCU-CGuCa--UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 19456 | 0.67 | 0.756726 |
Target: 5'- gGGGAUCGGCGGCagGcCGGGCAGgACGu -3' miRNA: 3'- -UUCUAGUUGCUGg-C-GCUCGUCaUGUg -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 37556 | 0.67 | 0.755656 |
Target: 5'- -cGAUCAccucGCGGCgCGCGucgagguAGguGUACGCg -3' miRNA: 3'- uuCUAGU----UGCUG-GCGC-------UCguCAUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 343 | 0.68 | 0.750284 |
Target: 5'- cAAGAUCcGCGugCGCGcggucgaucugcgcgAGCGGUuccGCGCc -3' miRNA: 3'- -UUCUAGuUGCugGCGC---------------UCGUCA---UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 629 | 0.68 | 0.745964 |
Target: 5'- cGAGggCAGCGucgccGCCGCG-GCAGcgACGCc -3' miRNA: 3'- -UUCuaGUUGC-----UGGCGCuCGUCa-UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 34439 | 0.68 | 0.745964 |
Target: 5'- cGGGUCGGCG-CUGguCGAGUAGUGCGg -3' miRNA: 3'- uUCUAGUUGCuGGC--GCUCGUCAUGUg -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 12293 | 0.68 | 0.735077 |
Target: 5'- cGGAUCAGCGGgC-CGGGCAccgGCACg -3' miRNA: 3'- uUCUAGUUGCUgGcGCUCGUca-UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 24894 | 0.68 | 0.724079 |
Target: 5'- --uGUCGAacuCGACCGaCGGGCGGUACu- -3' miRNA: 3'- uucUAGUU---GCUGGC-GCUCGUCAUGug -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 31211 | 0.68 | 0.724079 |
Target: 5'- cAGcgCAGCGGCCGgcuCGuGCAGcgACACg -3' miRNA: 3'- uUCuaGUUGCUGGC---GCuCGUCa-UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 5591 | 0.68 | 0.724079 |
Target: 5'- aAAGAUCcGCGACgGCGAaaagagcgagcuGCAGaagGCGCu -3' miRNA: 3'- -UUCUAGuUGCUGgCGCU------------CGUCa--UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 10619 | 0.68 | 0.712981 |
Target: 5'- -cGGUCAugcaggacGCGACCGCG-GCGGUGa-- -3' miRNA: 3'- uuCUAGU--------UGCUGGCGCuCGUCAUgug -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 28862 | 0.69 | 0.690541 |
Target: 5'- cGGGUCGGacugGuACCGCGAGCGGcacgGCGCc -3' miRNA: 3'- uUCUAGUUg---C-UGGCGCUCGUCa---UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 71 | 0.69 | 0.679223 |
Target: 5'- -cGAUCGGCG-CCGCGGGC-GUuuGCu -3' miRNA: 3'- uuCUAGUUGCuGGCGCUCGuCAugUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 6581 | 0.69 | 0.679223 |
Target: 5'- uAGAaCGACGACCGCG-GCAccuCACg -3' miRNA: 3'- uUCUaGUUGCUGGCGCuCGUcauGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 15426 | 0.69 | 0.679223 |
Target: 5'- -cGGUCGACGACCGCgccgacGAGCGcgccagGCGCc -3' miRNA: 3'- uuCUAGUUGCUGGCG------CUCGUca----UGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 37983 | 0.69 | 0.672409 |
Target: 5'- cAGAUCGucgacgccuggcugcGCGACCGC-AGCAagccGUGCACc -3' miRNA: 3'- uUCUAGU---------------UGCUGGCGcUCGU----CAUGUG- -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 49662 | 0.69 | 0.667858 |
Target: 5'- uGGGUCGACGucggaGCgGuCGAGCAGUGCu- -3' miRNA: 3'- uUCUAGUUGC-----UGgC-GCUCGUCAUGug -5' |
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12835 | 5' | -52.1 | NC_003387.1 | + | 13212 | 0.69 | 0.645029 |
Target: 5'- cAAGGUCAACGACaagcugaccgaCGcCGAGCAGgccgACAg -3' miRNA: 3'- -UUCUAGUUGCUG-----------GC-GCUCGUCa---UGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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