miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 18692 0.66 0.864743
Target:  5'- cACCGGGGugGggcgccguGCCgAGGCAGuaugacaGCa -3'
miRNA:   3'- -UGGCCUCugUaau-----UGGgUCCGUUg------CG- -5'
12836 3' -52.4 NC_003387.1 + 6358 0.66 0.863913
Target:  5'- cACCGuGucGCGcUUGGCCUcggccgcGGGCGACGCc -3'
miRNA:   3'- -UGGC-CucUGU-AAUUGGG-------UCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 26843 0.66 0.856324
Target:  5'- cGCCGGGGAgCAccaGGCCgCucGGCAACuGCa -3'
miRNA:   3'- -UGGCCUCU-GUaa-UUGG-Gu-CCGUUG-CG- -5'
12836 3' -52.4 NC_003387.1 + 15154 0.66 0.856324
Target:  5'- gACCGGGcagcGugAUgagcAGCCCGucGGCGACGa -3'
miRNA:   3'- -UGGCCU----CugUAa---UUGGGU--CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 29188 0.66 0.855468
Target:  5'- -aCGGuaucGACA-UGGCCCgAGGCAagcagguGCGCa -3'
miRNA:   3'- ugGCCu---CUGUaAUUGGG-UCCGU-------UGCG- -5'
12836 3' -52.4 NC_003387.1 + 49257 0.66 0.851154
Target:  5'- cGCCGGGGugacgcgcaucgaccGCGUgaaggucGCCCAGGUgcuCGCc -3'
miRNA:   3'- -UGGCCUC---------------UGUAau-----UGGGUCCGuu-GCG- -5'
12836 3' -52.4 NC_003387.1 + 26486 0.66 0.847658
Target:  5'- aGCaCGGcGAUc---GCCgGGGCGACGCu -3'
miRNA:   3'- -UG-GCCuCUGuaauUGGgUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 15062 0.66 0.847658
Target:  5'- uACCGGAuGGCGUggucgUGAC---GGCGACGCu -3'
miRNA:   3'- -UGGCCU-CUGUA-----AUUGgguCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 25789 0.66 0.847658
Target:  5'- gACCGccGACAgggccAGCCCGGcgaacaggaacaGCAGCGCg -3'
miRNA:   3'- -UGGCcuCUGUaa---UUGGGUC------------CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 44903 0.66 0.844125
Target:  5'- cGCCGGgcaccucggccgccAGGCGUUGcagcucggccugcACCuCGGGCAGCuuGCg -3'
miRNA:   3'- -UGGCC--------------UCUGUAAU-------------UGG-GUCCGUUG--CG- -5'
12836 3' -52.4 NC_003387.1 + 1707 0.66 0.838755
Target:  5'- gACUGGAucGCug-AGCgggCCGGGCGGCGCa -3'
miRNA:   3'- -UGGCCUc-UGuaaUUG---GGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 41037 0.66 0.838755
Target:  5'- -aCGGcGACAUUGacACCCAcGCGAuCGCc -3'
miRNA:   3'- ugGCCuCUGUAAU--UGGGUcCGUU-GCG- -5'
12836 3' -52.4 NC_003387.1 + 38604 0.66 0.838755
Target:  5'- uGCCGGuGAUcgaggcgcuGUUcGGCCCgcAGGCcGCGCu -3'
miRNA:   3'- -UGGCCuCUG---------UAA-UUGGG--UCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 43089 0.66 0.838755
Target:  5'- cACCaGGGugAcgGGCgCCGGGUAcgaGCGCg -3'
miRNA:   3'- -UGGcCUCugUaaUUG-GGUCCGU---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 18511 0.66 0.838755
Target:  5'- aGCCGGGcaccgaccgcGACGUggcGCUguGGCuuguGCGCg -3'
miRNA:   3'- -UGGCCU----------CUGUAau-UGGguCCGu---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 37329 0.66 0.837852
Target:  5'- uGCCGuGGACG--AGCCCccgccgcGGGCuGCGCu -3'
miRNA:   3'- -UGGCcUCUGUaaUUGGG-------UCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 12497 0.66 0.83513
Target:  5'- -gCGGGGGCugccgucguCCCAGGuCAGCGg -3'
miRNA:   3'- ugGCCUCUGuaauu----GGGUCC-GUUGCg -5'
12836 3' -52.4 NC_003387.1 + 42895 0.66 0.829625
Target:  5'- gGCCGGGGGCcagcacaaaAGCgCAGccuGCAGCGCc -3'
miRNA:   3'- -UGGCCUCUGuaa------UUGgGUC---CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 309 0.66 0.829625
Target:  5'- aGCCGGuGGagcccgAGCCC-GGCGacACGCa -3'
miRNA:   3'- -UGGCCuCUguaa--UUGGGuCCGU--UGCG- -5'
12836 3' -52.4 NC_003387.1 + 27568 0.66 0.829625
Target:  5'- gGCCGcuGACAcgAGCCCcgaucGGCuGCGCg -3'
miRNA:   3'- -UGGCcuCUGUaaUUGGGu----CCGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.