miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 83 0.67 0.800966
Target:  5'- cACCaGGAGGCAgacacaugGACCCcGaGCugauGCGCg -3'
miRNA:   3'- -UGG-CCUCUGUaa------UUGGGuC-CGu---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 309 0.66 0.829625
Target:  5'- aGCCGGuGGagcccgAGCCC-GGCGacACGCa -3'
miRNA:   3'- -UGGCCuCUguaa--UUGGGuCCGU--UGCG- -5'
12836 3' -52.4 NC_003387.1 + 985 0.67 0.800966
Target:  5'- cGCCGccGAGGCGccGACCgGGGUcgGAUGCg -3'
miRNA:   3'- -UGGC--CUCUGUaaUUGGgUCCG--UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 1707 0.66 0.838755
Target:  5'- gACUGGAucGCug-AGCgggCCGGGCGGCGCa -3'
miRNA:   3'- -UGGCCUc-UGuaaUUG---GGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 1739 0.7 0.627887
Target:  5'- cCCGGugcugaucGACAgcaugAGCCCGgcGGCGGCGCu -3'
miRNA:   3'- uGGCCu-------CUGUaa---UUGGGU--CCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 1954 0.69 0.695213
Target:  5'- gGCCGcGGGuCu---GgCCGGGCAGCGCc -3'
miRNA:   3'- -UGGC-CUCuGuaauUgGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 2495 0.73 0.454131
Target:  5'- uCCGGuAGGCGccgUAAgUCCAGGUGACGCg -3'
miRNA:   3'- uGGCC-UCUGUa--AUU-GGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 2699 0.7 0.639162
Target:  5'- cUCGGcGAgGUUGugCUcGGCGACGCg -3'
miRNA:   3'- uGGCCuCUgUAAUugGGuCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 2904 0.71 0.538649
Target:  5'- cGCCGGGcgcGGCA--GGCCgCGGGCGAgGCu -3'
miRNA:   3'- -UGGCCU---CUGUaaUUGG-GUCCGUUgCG- -5'
12836 3' -52.4 NC_003387.1 + 3183 0.67 0.780915
Target:  5'- aAUCGGGGugAgccuGCUCGGGCugcGACGUc -3'
miRNA:   3'- -UGGCCUCugUaau-UGGGUCCG---UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 4306 0.7 0.601987
Target:  5'- uGCUGGuGGCuguaccacugguuGCCCAGGCuGCGCc -3'
miRNA:   3'- -UGGCCuCUGuaau---------UGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 4905 0.67 0.780915
Target:  5'- uGCCGGGuGCggUAgcugcacuGCCCGGcGCGGCGUc -3'
miRNA:   3'- -UGGCCUcUGuaAU--------UGGGUC-CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 5927 0.68 0.728168
Target:  5'- cGCCGGGGGC--UGACaaCAGGUuuccGCGCg -3'
miRNA:   3'- -UGGCCUCUGuaAUUGg-GUCCGu---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 6358 0.66 0.863913
Target:  5'- cACCGuGucGCGcUUGGCCUcggccgcGGGCGACGCc -3'
miRNA:   3'- -UGGC-CucUGU-AAUUGGG-------UCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 6917 0.68 0.753896
Target:  5'- aGCCGcGGGACAUUGucggccaucaucgcgGCCUgcgcagcggcGGGCAgGCGCc -3'
miRNA:   3'- -UGGC-CUCUGUAAU---------------UGGG----------UCCGU-UGCG- -5'
12836 3' -52.4 NC_003387.1 + 7310 0.66 0.820276
Target:  5'- cGCCGGGGcCGU--ACCUgucGGCuGCGCu -3'
miRNA:   3'- -UGGCCUCuGUAauUGGGu--CCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 9369 0.69 0.695213
Target:  5'- aGCCGGuGGCG---GCCgAGGCGACc- -3'
miRNA:   3'- -UGGCCuCUGUaauUGGgUCCGUUGcg -5'
12836 3' -52.4 NC_003387.1 + 10208 0.68 0.749655
Target:  5'- gGCCGcGuGAuCGgucGCCCAGGCgAAUGCg -3'
miRNA:   3'- -UGGC-CuCU-GUaauUGGGUCCG-UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 12497 0.66 0.83513
Target:  5'- -gCGGGGGCugccgucguCCCAGGuCAGCGg -3'
miRNA:   3'- ugGCCUCUGuaauu----GGGUCC-GUUGCg -5'
12836 3' -52.4 NC_003387.1 + 13703 0.73 0.474627
Target:  5'- uCCcGAGcGCG---GCCCAGGCGGCGCa -3'
miRNA:   3'- uGGcCUC-UGUaauUGGGUCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.