miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 52562 0.67 0.800966
Target:  5'- uGCCGucGGCcagcaGGCCCAgcucGGCGGCGCg -3'
miRNA:   3'- -UGGCcuCUGuaa--UUGGGU----CCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 52008 0.66 0.820276
Target:  5'- gGCCGucGACAcgAugCCuuGCGGCGCa -3'
miRNA:   3'- -UGGCcuCUGUaaUugGGucCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 50989 0.68 0.728168
Target:  5'- gGCCGGGGGCGUuuucguuugcUGugCaCGcGGCAugcACGCa -3'
miRNA:   3'- -UGGCCUCUGUA----------AUugG-GU-CCGU---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 49636 0.66 0.820276
Target:  5'- aGCCGGucGGCGagcUUGGCCCcgaguGGGuCGACGUc -3'
miRNA:   3'- -UGGCCu-CUGU---AAUUGGG-----UCC-GUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 49589 0.71 0.560668
Target:  5'- uGCCGGuGACc-UGAgCCGGGCugaucuGCGCg -3'
miRNA:   3'- -UGGCCuCUGuaAUUgGGUCCGu-----UGCG- -5'
12836 3' -52.4 NC_003387.1 + 49257 0.66 0.851154
Target:  5'- cGCCGGGGugacgcgcaucgaccGCGUgaaggucGCCCAGGUgcuCGCc -3'
miRNA:   3'- -UGGCCUC---------------UGUAau-----UGGGUCCGuu-GCG- -5'
12836 3' -52.4 NC_003387.1 + 48825 0.7 0.627887
Target:  5'- cGCCGGu--CGUgcuGCUCGGcGCGACGCa -3'
miRNA:   3'- -UGGCCucuGUAau-UGGGUC-CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 48808 0.68 0.749655
Target:  5'- cACCGG--GCGUUAgcACCCAGGCGGu-- -3'
miRNA:   3'- -UGGCCucUGUAAU--UGGGUCCGUUgcg -5'
12836 3' -52.4 NC_003387.1 + 48399 0.68 0.738968
Target:  5'- gGCCGGGcGCA---GCCUGGGCAAC-Ca -3'
miRNA:   3'- -UGGCCUcUGUaauUGGGUCCGUUGcG- -5'
12836 3' -52.4 NC_003387.1 + 48204 0.68 0.728168
Target:  5'- cACCGGcGGCGgcGGCCgAGGUGAccCGCa -3'
miRNA:   3'- -UGGCCuCUGUaaUUGGgUCCGUU--GCG- -5'
12836 3' -52.4 NC_003387.1 + 45335 0.69 0.706278
Target:  5'- gGCCGcGGccGAucCGUgcaGCUCAGGCGACGCg -3'
miRNA:   3'- -UGGC-CU--CU--GUAau-UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 44903 0.66 0.844125
Target:  5'- cGCCGGgcaccucggccgccAGGCGUUGcagcucggccugcACCuCGGGCAGCuuGCg -3'
miRNA:   3'- -UGGCC--------------UCUGUAAU-------------UGG-GUCCGUUG--CG- -5'
12836 3' -52.4 NC_003387.1 + 44711 0.67 0.814566
Target:  5'- gUCGGuGACGUUcguuaugccucgcccGGCCgGGGCGccgaaGCGCa -3'
miRNA:   3'- uGGCCuCUGUAA---------------UUGGgUCCGU-----UGCG- -5'
12836 3' -52.4 NC_003387.1 + 43840 0.67 0.810719
Target:  5'- -aUGGcGGCGUUcACCuCGGGCGACaGCa -3'
miRNA:   3'- ugGCCuCUGUAAuUGG-GUCCGUUG-CG- -5'
12836 3' -52.4 NC_003387.1 + 43182 0.67 0.770641
Target:  5'- cCCGGcGGCGgcuuGCgCAGGCAcCGCu -3'
miRNA:   3'- uGGCCuCUGUaau-UGgGUCCGUuGCG- -5'
12836 3' -52.4 NC_003387.1 + 43089 0.66 0.838755
Target:  5'- cACCaGGGugAcgGGCgCCGGGUAcgaGCGCg -3'
miRNA:   3'- -UGGcCUCugUaaUUG-GGUCCGU---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 42895 0.66 0.829625
Target:  5'- gGCCGGGGGCcagcacaaaAGCgCAGccuGCAGCGCc -3'
miRNA:   3'- -UGGCCUCUGuaa------UUGgGUC---CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 41037 0.66 0.838755
Target:  5'- -aCGGcGACAUUGacACCCAcGCGAuCGCc -3'
miRNA:   3'- ugGCCuCUGUAAU--UGGGUcCGUU-GCG- -5'
12836 3' -52.4 NC_003387.1 + 39171 0.67 0.777849
Target:  5'- gAUCGGGcugcccaggcccuuGaACAgcgAGCCCAGGCcGACGCu -3'
miRNA:   3'- -UGGCCU--------------C-UGUaa-UUGGGUCCG-UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 38604 0.66 0.838755
Target:  5'- uGCCGGuGAUcgaggcgcuGUUcGGCCCgcAGGCcGCGCu -3'
miRNA:   3'- -UGGCCuCUG---------UAA-UUGGG--UCCGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.