miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 21499 1.13 0.001
Target:  5'- gACCGGAGACAUUAACCCAGGCAACGCg -3'
miRNA:   3'- -UGGCCUCUGUAAUUGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 31319 0.83 0.119101
Target:  5'- cGCCGGGGGCGUUGGCguCCaAGGCAuuaGCGCg -3'
miRNA:   3'- -UGGCCUCUGUAAUUG--GG-UCCGU---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 31673 0.8 0.167388
Target:  5'- aGCCGucGGGGCAUUAGCCCAcccuGGCGACGg -3'
miRNA:   3'- -UGGC--CUCUGUAAUUGGGU----CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 22347 0.78 0.232505
Target:  5'- cGCCGGuGGgGcUGGCCCAGGCGcacccgGCGCa -3'
miRNA:   3'- -UGGCCuCUgUaAUUGGGUCCGU------UGCG- -5'
12836 3' -52.4 NC_003387.1 + 21563 0.75 0.35954
Target:  5'- gUCGuGcAGACcgUGGCCCAGGC-GCGCg -3'
miRNA:   3'- uGGC-C-UCUGuaAUUGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22493 0.75 0.368361
Target:  5'- uACCGGGcGACG---GCCUcGGCGGCGCg -3'
miRNA:   3'- -UGGCCU-CUGUaauUGGGuCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 29310 0.75 0.377329
Target:  5'- gACCGcGGGCAcgAGCgCCAGGCcGCGCu -3'
miRNA:   3'- -UGGCcUCUGUaaUUG-GGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 16098 0.74 0.386443
Target:  5'- gGCCGGAuuaucGACccgaUAACCaAGGCAACGCu -3'
miRNA:   3'- -UGGCCU-----CUGua--AUUGGgUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 16859 0.74 0.3957
Target:  5'- cGCgaGGAGAUGgcgccgcacGCCCAGGCGAUGCa -3'
miRNA:   3'- -UGg-CCUCUGUaau------UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 2495 0.73 0.454131
Target:  5'- uCCGGuAGGCGccgUAAgUCCAGGUGACGCg -3'
miRNA:   3'- uGGCC-UCUGUa--AUU-GGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 23692 0.73 0.47049
Target:  5'- gGCCGGAuACAacgcgagcaacGCCCAGGCGGCGa -3'
miRNA:   3'- -UGGCCUcUGUaau--------UGGGUCCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 13703 0.73 0.474627
Target:  5'- uCCcGAGcGCG---GCCCAGGCGGCGCa -3'
miRNA:   3'- uGGcCUC-UGUaauUGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 18394 0.72 0.495575
Target:  5'- gAUCGGcugcGACGggucGGCCgCGGGCAGCGCg -3'
miRNA:   3'- -UGGCCu---CUGUaa--UUGG-GUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 15306 0.72 0.516932
Target:  5'- cACCGGcGACAUUGugCUgcgcGGCGACGa -3'
miRNA:   3'- -UGGCCuCUGUAAUugGGu---CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 2904 0.71 0.538649
Target:  5'- cGCCGGGcgcGGCA--GGCCgCGGGCGAgGCu -3'
miRNA:   3'- -UGGCCU---CUGUaaUUGG-GUCCGUUgCG- -5'
12836 3' -52.4 NC_003387.1 + 49589 0.71 0.560668
Target:  5'- uGCCGGuGACc-UGAgCCGGGCugaucuGCGCg -3'
miRNA:   3'- -UGGCCuCUGuaAUUgGGUCCGu-----UGCG- -5'
12836 3' -52.4 NC_003387.1 + 33348 0.7 0.594127
Target:  5'- uGCCGGu----UUGACCCgcAGGCGugGCa -3'
miRNA:   3'- -UGGCCucuguAAUUGGG--UCCGUugCG- -5'
12836 3' -52.4 NC_003387.1 + 4306 0.7 0.601987
Target:  5'- uGCUGGuGGCuguaccacugguuGCCCAGGCuGCGCc -3'
miRNA:   3'- -UGGCCuCUGuaau---------UGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 28601 0.7 0.605359
Target:  5'- gGCCGGGauagcugccGACGcccgcAugCCAGGCGAUGCc -3'
miRNA:   3'- -UGGCCU---------CUGUaa---UugGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 1739 0.7 0.627887
Target:  5'- cCCGGugcugaucGACAgcaugAGCCCGgcGGCGGCGCu -3'
miRNA:   3'- uGGCCu-------CUGUaa---UUGGGU--CCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.