miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 48825 0.7 0.627887
Target:  5'- cGCCGGu--CGUgcuGCUCGGcGCGACGCa -3'
miRNA:   3'- -UGGCCucuGUAau-UGGGUC-CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 2699 0.7 0.639162
Target:  5'- cUCGGcGAgGUUGugCUcGGCGACGCg -3'
miRNA:   3'- uGGCCuCUgUAAUugGGuCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 35546 0.7 0.65043
Target:  5'- cGCCGuc-GCc---GCCCAGGCGGCGCa -3'
miRNA:   3'- -UGGCcucUGuaauUGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 32739 0.69 0.661681
Target:  5'- -gCGGAGAac--GGCCCcgaGGGCAGCGUu -3'
miRNA:   3'- ugGCCUCUguaaUUGGG---UCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22523 0.69 0.694103
Target:  5'- cGCCGc-GACccUGGCCCAGGCcgagggcuggcucGACGCg -3'
miRNA:   3'- -UGGCcuCUGuaAUUGGGUCCG-------------UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 9369 0.69 0.695213
Target:  5'- aGCCGGuGGCG---GCCgAGGCGACc- -3'
miRNA:   3'- -UGGCCuCUGUaauUGGgUCCGUUGcg -5'
12836 3' -52.4 NC_003387.1 + 1954 0.69 0.695213
Target:  5'- gGCCGcGGGuCu---GgCCGGGCAGCGCc -3'
miRNA:   3'- -UGGC-CUCuGuaauUgGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 37049 0.69 0.695213
Target:  5'- cGCCGG-GAUucaucACCUgcguGGGCAACGCc -3'
miRNA:   3'- -UGGCCuCUGuaau-UGGG----UCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 14933 0.69 0.706278
Target:  5'- gACCGcGGGuGCugc-GCCCAGGC-GCGCu -3'
miRNA:   3'- -UGGC-CUC-UGuaauUGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 29587 0.69 0.706278
Target:  5'- gGCCGaGGGGCcg-GAgCCGGGCGACu- -3'
miRNA:   3'- -UGGC-CUCUGuaaUUgGGUCCGUUGcg -5'
12836 3' -52.4 NC_003387.1 + 45335 0.69 0.706278
Target:  5'- gGCCGcGGccGAucCGUgcaGCUCAGGCGACGCg -3'
miRNA:   3'- -UGGC-CU--CU--GUAau-UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 20676 0.68 0.727082
Target:  5'- -gCGGcGACAgacuugcGACCCgacucggGGGCGACGCg -3'
miRNA:   3'- ugGCCuCUGUaa-----UUGGG-------UCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 50989 0.68 0.728168
Target:  5'- gGCCGGGGGCGUuuucguuugcUGugCaCGcGGCAugcACGCa -3'
miRNA:   3'- -UGGCCUCUGUA----------AUugG-GU-CCGU---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 48204 0.68 0.728168
Target:  5'- cACCGGcGGCGgcGGCCgAGGUGAccCGCa -3'
miRNA:   3'- -UGGCCuCUGUaaUUGGgUCCGUU--GCG- -5'
12836 3' -52.4 NC_003387.1 + 5927 0.68 0.728168
Target:  5'- cGCCGGGGGC--UGACaaCAGGUuuccGCGCg -3'
miRNA:   3'- -UGGCCUCUGuaAUUGg-GUCCGu---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 28805 0.68 0.728168
Target:  5'- aGCCGGGcagcucgacGACGUUcAGCCCcucGGC-GCGCa -3'
miRNA:   3'- -UGGCCU---------CUGUAA-UUGGGu--CCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 25004 0.68 0.732501
Target:  5'- aACCGGGGGCGgcugauaugcagcGGCCUgucgGGGuCGGCGCa -3'
miRNA:   3'- -UGGCCUCUGUaa-----------UUGGG----UCC-GUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22063 0.68 0.736817
Target:  5'- gUCGGGGGCGUUucucguuggcuCUCAGGCGcucucGCGCu -3'
miRNA:   3'- uGGCCUCUGUAAuu---------GGGUCCGU-----UGCG- -5'
12836 3' -52.4 NC_003387.1 + 33477 0.68 0.738968
Target:  5'- uGCCGacGAUGUUGagcaccugGCCCGGcGCGACGCu -3'
miRNA:   3'- -UGGCcuCUGUAAU--------UGGGUC-CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 48399 0.68 0.738968
Target:  5'- gGCCGGGcGCA---GCCUGGGCAAC-Ca -3'
miRNA:   3'- -UGGCCUcUGUaauUGGGUCCGUUGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.