miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 14306 0.67 0.780915
Target:  5'- -gCGGc-GCAUcAACCUGGGCGugGCg -3'
miRNA:   3'- ugGCCucUGUAaUUGGGUCCGUugCG- -5'
12836 3' -52.4 NC_003387.1 + 14933 0.69 0.706278
Target:  5'- gACCGcGGGuGCugc-GCCCAGGC-GCGCu -3'
miRNA:   3'- -UGGC-CUC-UGuaauUGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 15062 0.66 0.847658
Target:  5'- uACCGGAuGGCGUggucgUGAC---GGCGACGCu -3'
miRNA:   3'- -UGGCCU-CUGUA-----AUUGgguCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 15154 0.66 0.856324
Target:  5'- gACCGGGcagcGugAUgagcAGCCCGucGGCGACGa -3'
miRNA:   3'- -UGGCCU----CugUAa---UUGGGU--CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 15306 0.72 0.516932
Target:  5'- cACCGGcGACAUUGugCUgcgcGGCGACGa -3'
miRNA:   3'- -UGGCCuCUGUAAUugGGu---CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 15976 0.67 0.770641
Target:  5'- -aCGGuGAC----GCCCAGGCGcuCGCa -3'
miRNA:   3'- ugGCCuCUGuaauUGGGUCCGUu-GCG- -5'
12836 3' -52.4 NC_003387.1 + 16098 0.74 0.386443
Target:  5'- gGCCGGAuuaucGACccgaUAACCaAGGCAACGCu -3'
miRNA:   3'- -UGGCCU-----CUGua--AUUGGgUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 16859 0.74 0.3957
Target:  5'- cGCgaGGAGAUGgcgccgcacGCCCAGGCGAUGCa -3'
miRNA:   3'- -UGg-CCUCUGUaau------UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 18190 0.67 0.800966
Target:  5'- gAUCGGcugcGAgGUgcGCCUcGGCGACGCg -3'
miRNA:   3'- -UGGCCu---CUgUAauUGGGuCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 18394 0.72 0.495575
Target:  5'- gAUCGGcugcGACGggucGGCCgCGGGCAGCGCg -3'
miRNA:   3'- -UGGCCu---CUGUaa--UUGG-GUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 18511 0.66 0.838755
Target:  5'- aGCCGGGcaccgaccgcGACGUggcGCUguGGCuuguGCGCg -3'
miRNA:   3'- -UGGCCU----------CUGUAau-UGGguCCGu---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 18692 0.66 0.864743
Target:  5'- cACCGGGGugGggcgccguGCCgAGGCAGuaugacaGCa -3'
miRNA:   3'- -UGGCCUCugUaau-----UGGgUCCGUUg------CG- -5'
12836 3' -52.4 NC_003387.1 + 19478 0.67 0.780915
Target:  5'- cGCC-GAGGCc---ACCgCGGGCGACGUg -3'
miRNA:   3'- -UGGcCUCUGuaauUGG-GUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 20676 0.68 0.727082
Target:  5'- -gCGGcGACAgacuugcGACCCgacucggGGGCGACGCg -3'
miRNA:   3'- ugGCCuCUGUaa-----UUGGG-------UCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 21499 1.13 0.001
Target:  5'- gACCGGAGACAUUAACCCAGGCAACGCg -3'
miRNA:   3'- -UGGCCUCUGUAAUUGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 21563 0.75 0.35954
Target:  5'- gUCGuGcAGACcgUGGCCCAGGC-GCGCg -3'
miRNA:   3'- uGGC-C-UCUGuaAUUGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22063 0.68 0.736817
Target:  5'- gUCGGGGGCGUUucucguuggcuCUCAGGCGcucucGCGCu -3'
miRNA:   3'- uGGCCUCUGUAAuu---------GGGUCCGU-----UGCG- -5'
12836 3' -52.4 NC_003387.1 + 22347 0.78 0.232505
Target:  5'- cGCCGGuGGgGcUGGCCCAGGCGcacccgGCGCa -3'
miRNA:   3'- -UGGCCuCUgUaAUUGGGUCCGU------UGCG- -5'
12836 3' -52.4 NC_003387.1 + 22493 0.75 0.368361
Target:  5'- uACCGGGcGACG---GCCUcGGCGGCGCg -3'
miRNA:   3'- -UGGCCU-CUGUaauUGGGuCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22523 0.69 0.694103
Target:  5'- cGCCGc-GACccUGGCCCAGGCcgagggcuggcucGACGCg -3'
miRNA:   3'- -UGGCcuCUGuaAUUGGGUCCG-------------UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.