Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12836 | 3' | -52.4 | NC_003387.1 | + | 15154 | 0.66 | 0.856324 |
Target: 5'- gACCGGGcagcGugAUgagcAGCCCGucGGCGACGa -3' miRNA: 3'- -UGGCCU----CugUAa---UUGGGU--CCGUUGCg -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 26843 | 0.66 | 0.856324 |
Target: 5'- cGCCGGGGAgCAccaGGCCgCucGGCAACuGCa -3' miRNA: 3'- -UGGCCUCU-GUaa-UUGG-Gu-CCGUUG-CG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 6358 | 0.66 | 0.863913 |
Target: 5'- cACCGuGucGCGcUUGGCCUcggccgcGGGCGACGCc -3' miRNA: 3'- -UGGC-CucUGU-AAUUGGG-------UCCGUUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 44903 | 0.66 | 0.844125 |
Target: 5'- cGCCGGgcaccucggccgccAGGCGUUGcagcucggccugcACCuCGGGCAGCuuGCg -3' miRNA: 3'- -UGGCC--------------UCUGUAAU-------------UGG-GUCCGUUG--CG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 83 | 0.67 | 0.800966 |
Target: 5'- cACCaGGAGGCAgacacaugGACCCcGaGCugauGCGCg -3' miRNA: 3'- -UGG-CCUCUGUaa------UUGGGuC-CGu---UGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 30230 | 0.67 | 0.800966 |
Target: 5'- cGCCGccGAGGCcgUcGCCCGGuaCGACGCc -3' miRNA: 3'- -UGGC--CUCUGuaAuUGGGUCc-GUUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 18190 | 0.67 | 0.800966 |
Target: 5'- gAUCGGcugcGAgGUgcGCCUcGGCGACGCg -3' miRNA: 3'- -UGGCCu---CUgUAauUGGGuCCGUUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 28542 | 0.67 | 0.770641 |
Target: 5'- cCCGGcGACAauugggcGACCgAGGCGGCGa -3' miRNA: 3'- uGGCCuCUGUaa-----UUGGgUCCGUUGCg -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 19478 | 0.67 | 0.780915 |
Target: 5'- cGCC-GAGGCc---ACCgCGGGCGACGUg -3' miRNA: 3'- -UGGcCUCUGuaauUGG-GUCCGUUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 4905 | 0.67 | 0.780915 |
Target: 5'- uGCCGGGuGCggUAgcugcacuGCCCGGcGCGGCGUc -3' miRNA: 3'- -UGGCCUcUGuaAU--------UGGGUC-CGUUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 43182 | 0.67 | 0.770641 |
Target: 5'- cCCGGcGGCGgcuuGCgCAGGCAcCGCu -3' miRNA: 3'- uGGCCuCUGUaau-UGgGUCCGUuGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 15976 | 0.67 | 0.770641 |
Target: 5'- -aCGGuGAC----GCCCAGGCGcuCGCa -3' miRNA: 3'- ugGCCuCUGuaauUGGGUCCGUu-GCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 3183 | 0.67 | 0.780915 |
Target: 5'- aAUCGGGGugAgccuGCUCGGGCugcGACGUc -3' miRNA: 3'- -UGGCCUCugUaau-UGGGUCCG---UUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 52562 | 0.67 | 0.800966 |
Target: 5'- uGCCGucGGCcagcaGGCCCAgcucGGCGGCGCg -3' miRNA: 3'- -UGGCcuCUGuaa--UUGGGU----CCGUUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 985 | 0.67 | 0.800966 |
Target: 5'- cGCCGccGAGGCGccGACCgGGGUcgGAUGCg -3' miRNA: 3'- -UGGC--CUCUGUaaUUGGgUCCG--UUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 27261 | 0.67 | 0.810719 |
Target: 5'- cGCCGcauGAGcCGc-GACgCGGGCAGCGCg -3' miRNA: 3'- -UGGC---CUCuGUaaUUGgGUCCGUUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 43840 | 0.67 | 0.810719 |
Target: 5'- -aUGGcGGCGUUcACCuCGGGCGACaGCa -3' miRNA: 3'- ugGCCuCUGUAAuUGG-GUCCGUUG-CG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 39171 | 0.67 | 0.777849 |
Target: 5'- gAUCGGGcugcccaggcccuuGaACAgcgAGCCCAGGCcGACGCu -3' miRNA: 3'- -UGGCCU--------------C-UGUaa-UUGGGUCCG-UUGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 44711 | 0.67 | 0.814566 |
Target: 5'- gUCGGuGACGUUcguuaugccucgcccGGCCgGGGCGccgaaGCGCa -3' miRNA: 3'- uGGCCuCUGUAA---------------UUGGgUCCGU-----UGCG- -5' |
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12836 | 3' | -52.4 | NC_003387.1 | + | 14306 | 0.67 | 0.780915 |
Target: 5'- -gCGGc-GCAUcAACCUGGGCGugGCg -3' miRNA: 3'- ugGCCucUGUAaUUGGGUCCGUugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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